AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Laca7g03196 | ATGGGTTCAATCGGAGAAATGAAACCGTTTAAAGATCCAATAATTGGTGGTGAAAGAACAGATTTTGTGGAGAGTGGAAAGAGTAGCATGTGTAGAGGAAGTACAAGCACTGATATAAGCGATGAAAGTTGTTACAGCACGTTGAGCGCCACCATCAGCAAACCTCATAAATCAAACGATTCAAGATGGGAAGCGATTCAGAGTGTTAGATTACAAGATGGGAATCTGGGTCTGAATCATTTTCGATTGTTGAAAAGATTGGGTTGCGGGGACATCGGAAGTGTTTATCTCTGCGAGCTTACGGGTACCAAATCGTATTATGCAATGAAGGTGATGGATAAAGTGTCGCTTGAAGGTCGTAATAAGTTATTAAGAGCGCAAACAGAAAAGGAAATACTTCAATCTTTGGATCATCCTTTTCTTCCCAGTTTGTATACTCATTTTGAGACGGATAAGTTCTCGTGTTTGGTAATGGAGTTTTGCCCCGGCGGCGATTTGCATATGCTCCGGCAACGCCAGCCGGGAAAACGATTTTGTGAACAAGCTGTCAAATTTTATGTTGCTGAGATACTTCTTGCTATGGAGTACCTGCATATGCTTGGAATCGTGTATCGTGACCTGAAGCCGGAAAATGTTCTTGTTAGGGAAGATGCGTCTTTAGAGAACGATCCTTTACAGAAGAGCTCCGGTGGTTATTGCATCGAACCGCCGTCGTCTTCGTCGTGTATCCAACCCTCATGTGTAGTTTCTACCTCTTGTTTCTCTCCGAGAATGTTTAGATCCAAGAAAGATAAGAAATTGAAGTCGAAATCGGAAATTGGGAACCAGGTGAGTCCGTTACCGGAGCTTATGGCGGAGCCGACCGGTGTCCGGTCAATGTCGTTTGTTGGGACGCATGAGTATTTGGCGCCGGAGATTATAAAAAACGAAGGACATGGCAGCGCGGTGGATTGGTGGACGCTTGGTATATTTTTGTACGAGTTGCTTTTTGGGAAAACTCCGTTCAAAGGGACAGGCAATCGAGCGACGTTGACAAATGTGGTTGGGCAGCCGCTGAGGTTCCCGGAGTCGCCGGTTGTGAGTTTTCCGGCGAGGGATCTGATGAGAGGTTTGCTGGTGAAAGAACCAAAGCAACGATTGGCATACAAGAGAGGAGCTACTGAAATCAAACAACATCCTTTCTTTGAAGGTGTTAATTGGGCGTTGATTCGTTGTGCAACCCCACCGGAAATCCCAAAGGCGGTGGTGTTTGAACGGAATTCTTCTCCGATGACATCCCTTTGCGAGAAAAACGCTGCTGCTGTCGTGGTTGCACCTGAGAAGAAGGGATCCGAGAATTATCTTGAGTTTGATTTCTTTTGA | 1362 | 45.37 | MGSIGEMKPFKDPIIGGERTDFVESGKSSMCRGSTSTDISDESCYSTLSATISKPHKSNDSRWEAIQSVRLQDGNLGLNHFRLLKRLGCGDIGSVYLCELTGTKSYYAMKVMDKVSLEGRNKLLRAQTEKEILQSLDHPFLPSLYTHFETDKFSCLVMEFCPGGDLHMLRQRQPGKRFCEQAVKFYVAEILLAMEYLHMLGIVYRDLKPENVLVREDASLENDPLQKSSGGYCIEPPSSSSCIQPSCVVSTSCFSPRMFRSKKDKKLKSKSEIGNQVSPLPELMAEPTGVRSMSFVGTHEYLAPEIIKNEGHGSAVDWWTLGIFLYELLFGKTPFKGTGNRATLTNVVGQPLRFPESPVVSFPARDLMRGLLVKEPKQRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVVFERNSSPMTSLCEKNAAAVVVAPEKKGSENYLEFDFF | 453 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Laca7g03196 | 453 | Gene3D | Transferase(Phosphotransferase) domain 1 | 292 | 413 | - | - | |
| Laca7g03196 | 453 | SUPERFAMILY | Protein kinase-like (PK-like) | 61 | 425 | IPR011009 | - | |
| Laca7g03196 | 453 | ProSiteProfiles | Protein kinase domain profile. | 81 | 395 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Laca7g03196 | 453 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 202 | 214 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Laca7g03196 | 453 | FunFam | Serine-threonine-protein kinase D6PK-like | 79 | 164 | - | - | |
| Laca7g03196 | 453 | CDD | STKc-phototropin-like | 80 | 413 | - | - | |
| Laca7g03196 | 453 | PANTHER | FLIPPASE KINASE 1-RELATED | 24 | 418 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Laca7g03196 | 453 | Gene3D | Transferase(Phosphotransferase) domain 1 | 165 | 218 | - | - | |
| Laca7g03196 | 453 | SMART | serkin-6 | 81 | 395 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Laca7g03196 | 453 | Pfam | Protein kinase domain | 82 | 218 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Laca7g03196 | 453 | Pfam | Protein kinase domain | 292 | 395 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Laca7g03196 | 453 | Gene3D | Phosphorylase Kinase; domain 1 | 79 | 164 | - | - | |
| Laca7g03196 | 453 | FunFam | Serine-threonine-protein kinase OXI1 | 165 | 221 | - | - | |
| Laca7g03196 | 453 | FunFam | serine-threonine-protein kinase D6PK-like | 290 | 413 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Laca7g03196 | K08286 | protein-serine/threonine kinase [EC:2.7.11.-] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 115634 | Laca5g00041 | Laca7g03196 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Laca | Laca-Chr4:72066741 | Laca7g03196 | Laca-Chr7:149351683 | dispersed | |
| Laca | Laca-Chr5:58414185 | Laca7g03196 | Laca-Chr7:149351683 | dispersed | |
| Laca | Laca-Chr6:38278868 | Laca7g03196 | Laca-Chr7:149351683 | dispersed | |
| Laca | Laca-Chr7:149351683 | Laca9g02563 | Laca-Chr9:90219076 | dispersed | |
| Laca | Laca-Chr5:2162097 | Laca7g03196 | Laca-Chr7:149351683 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lacanog00160 | . | 464 | 903 | AGC Kinase gene family | AT3G52890 | 62.054 | 0.0 | 551.0 | |
| Lacanog00570 | . | 215 | 356 | AGC Kinase gene family | AT3G08720 | 26.752 | 6.29e-09 | 55.1 | |
| Lacanog00750 | . | 984 | 1146 | AGC Kinase gene family | AT5G62310 | 51.534 | 9.51e-43 | 159.0 | |
| Lacanog00992 | . | 260 | 375 | AGC Kinase gene family | AT3G08720 | 55.303 | 1.06e-39 | 141.0 | |
| Lacanog01543 | . | 602 | 714 | AGC Kinase gene family | AT1G48490 | 64.035 | 2.02e-39 | 137.0 | |
| Lacanog02380 | . | 596 | 780 | AGC Kinase gene family | AT1G48490 | 61.828 | 1.65e-67 | 229.0 | |
| Lacanog02397 | . | 471 | 934 | AGC Kinase gene family | AT3G52890 | 68.67 | 0.0 | 660.0 | |
| Lacanog02442 | . | 681 | 890 | AGC Kinase gene family | AT3G17850 | 70.423 | 6.71e-99 | 310.0 | |
| Lacanog02520 | . | 104 | 765 | AGC Kinase gene family | AT2G44830 | 67.857 | 0.0 | 849.0 | |
| Lacanog03093 | . | 11 | 525 | AGC Kinase gene family | AT2G26700 | 59.091 | 0.0 | 575.0 | |
| Lacanog03822 | . | 300 | 578 | AGC Kinase gene family | AT3G27580 | 73.077 | 1.12e-144 | 416.0 | |
| Lacanog03823 | . | 43 | 241 | AGC Kinase gene family | AT4G26610 | 62.069 | 4.04e-78 | 245.0 | |
| Lacanog04044 | . | 377 | 934 | AGC Kinase gene family | AT3G52890 | 58.907 | 0.0 | 645.0 | |
| Lacanog04682 | . | 732 | 890 | AGC Kinase gene family | AT3G17850 | 60.87 | 4.81e-53 | 186.0 | |
| Lacanog05476 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 65.665 | 0.0 | 562.0 | |
| Lacanog06033 | . | 602 | 780 | AGC Kinase gene family | AT1G48490 | 65.556 | 1.69e-71 | 232.0 | |
| Lacanog06034 | . | 828 | 890 | AGC Kinase gene family | AT3G17850 | 75.385 | 6.30e-28 | 106.0 | |
| Laca1g00364 | . | 762 | 894 | AGC Kinase gene family | AT5G62310 | 82.707 | 3.32e-67 | 229.0 | |
| Laca1g00379 | . | 1009 | 1107 | AGC Kinase gene family | AT5G62310 | 52.941 | 6.91e-27 | 100.0 | |
| Laca1g02429 | . | 209 | 362 | AGC Kinase gene family | AT3G08730 | 27.222 | 2.33e-08 | 53.5 | |
| Laca1g03022 | . | 990 | 1107 | AGC Kinase gene family | AT5G62310 | 67.213 | 8.06e-51 | 173.0 | |
| Laca2g01081 | . | 324 | 375 | AGC Kinase gene family | AT3G08720 | 67.925 | 1.61e-14 | 69.7 | |
| Laca2g02337 | . | 2 | 499 | AGC Kinase gene family | AT5G40030 | 69.231 | 0.0 | 692.0 | |
| Laca2g02381 | . | 98 | 586 | AGC Kinase gene family | AT5G47750 | 67.203 | 0.0 | 654.0 | |
| Laca2g02606 | . | 1020 | 1210 | AGC Kinase gene family | AT3G17850 | 39.409 | 2.74e-33 | 126.0 | |
| Laca2g03069 | . | 286 | 375 | AGC Kinase gene family | AT3G08720 | 70.33 | 2.68e-38 | 134.0 | |
| Laca3g01571 | . | 237 | 312 | AGC Kinase gene family | AT3G08720 | 78.947 | 4.48e-36 | 135.0 | |
| Laca3g02055 | . | 732 | 890 | AGC Kinase gene family | AT3G17850 | 70.186 | 1.06e-72 | 235.0 | |
| Laca3g02940 | . | 134 | 292 | AGC Kinase gene family | AT5G58140 | 36.31 | 7.91e-21 | 95.5 | |
| Laca3g03251 | . | 1 | 547 | AGC Kinase gene family | AT3G23310 | 80.474 | 0.0 | 902.0 | |
| Laca3g03468 | . | 276 | 334 | AGC Kinase gene family | AT3G08720 | 77.966 | 1.41e-28 | 107.0 | |
| Laca3g03638 | . | 1 | 328 | AGC Kinase gene family | AT3G08720 | 50.915 | 3.21e-103 | 306.0 | |
| Laca4g00034 | . | 940 | 1146 | AGC Kinase gene family | AT5G62310 | 60.87 | 2.45e-75 | 251.0 | |
| Laca4g00710 | . | 271 | 341 | AGC Kinase gene family | AT3G08720 | 64.935 | 6.43e-23 | 96.3 | |
| Laca4g01480 | . | 1020 | 1210 | AGC Kinase gene family | AT3G17850 | 55.497 | 7.49e-60 | 202.0 | |
| Laca4g01738 | . | 86 | 586 | AGC Kinase gene family | AT5G47750 | 79.648 | 0.0 | 823.0 | |
| Laca4g01793 | . | 129 | 325 | AGC Kinase gene family | AT3G08730 | 24.123 | 2.17e-07 | 51.6 | |
| Laca4g02062 | . | 28 | 459 | AGC Kinase gene family | AT3G08720 | 57.333 | 3.37e-175 | 502.0 | |
| Laca4g02896 | . | 553 | 721 | AGC Kinase gene family | AT1G48490 | 61.176 | 4.27e-61 | 202.0 | |
| Laca4g02970 | . | 276 | 375 | AGC Kinase gene family | AT3G08720 | 71.287 | 1.21e-42 | 150.0 | |
| Laca4g03505 | . | 1 | 504 | AGC Kinase gene family | AT5G09890 | 75.486 | 0.0 | 815.0 | |
| Laca4g04793 | . | 989 | 1124 | AGC Kinase gene family | AT5G62310 | 49.286 | 2.98e-30 | 121.0 | |
| Laca5g00041 | ACH | 92 | 586 | AGC Kinase gene family | AT5G47750 | 79.719 | 0.0 | 796.0 | |
| Laca5g00719 | . | 1 | 1009 | AGC Kinase gene family | AT1G45160 | 43.829 | 0.0 | 768.0 | |
| Laca5g00981 | . | 37 | 910 | AGC Kinase gene family | AT5G58140 | 69.441 | 0.0 | 1254.0 | |
| Laca5g01835 | . | 4 | 519 | AGC Kinase gene family | AT4G33080 | 77.351 | 0.0 | 833.0 | |
| Laca5g02867 | . | 996 | 1127 | AGC Kinase gene family | AT5G62310 | 61.029 | 9.71e-47 | 165.0 | |
| Laca5g03067 | ACH | 1 | 471 | AGC Kinase gene family | AT1G53700 | 61.303 | 0.0 | 545.0 | |
| Laca5g03264 | . | 335 | 396 | AGC Kinase gene family | AT2G20470 | 58.065 | 1.90e-18 | 84.3 | |
| Laca5g03785 | . | 1 | 468 | AGC Kinase gene family | AT3G08720 | 67.941 | 0.0 | 647.0 | |
| Laca5g04222 | . | 18 | 996 | AGC Kinase gene family | AT3G45780 | 69.35 | 0.0 | 1397.0 | |
| Laca6g01023 | ACH | 119 | 346 | AGC Kinase gene family | AT3G08730 | 24.303 | 3.78e-08 | 54.7 | |
| Laca6g01133 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 64.179 | 0.0 | 541.0 | |
| Laca6g01343 | . | 16 | 408 | AGC Kinase gene family | AT3G20830 | 56.863 | 1.70e-155 | 443.0 | |
| Laca6g02007 | ACH | 276 | 370 | AGC Kinase gene family | AT3G08720 | 69.792 | 1.40e-38 | 136.0 | |
| Laca6g02185 | . | 244 | 409 | AGC Kinase gene family | AT3G17850 | 63.69 | 8.24e-65 | 215.0 | |
| Laca6g02186 | . | 712 | 981 | AGC Kinase gene family | AT3G17850 | 72.993 | 1.56e-130 | 406.0 | |
| Laca6g02880 | . | 135 | 449 | AGC Kinase gene family | AT3G08720 | 35.016 | 2.02e-47 | 176.0 | |
| Laca7g00840 | . | 9 | 438 | AGC Kinase gene family | AT2G34650 | 60.613 | 0.0 | 526.0 | |
| Laca7g01137 | . | 40 | 263 | AGC Kinase gene family | AT5G04510 | 23.431 | 4.73e-10 | 62.0 | |
| Laca7g01572 | . | 135 | 233 | AGC Kinase gene family | AT5G58140 | 44.444 | 4.42e-21 | 96.3 | |
| Laca7g01775 | . | 732 | 830 | AGC Kinase gene family | AT3G17850 | 65.657 | 4.53e-39 | 141.0 | |
| Laca7g02149 | . | 336 | 393 | AGC Kinase gene family | AT2G19400 | 52.459 | 2.50e-11 | 62.4 | |
| Laca7g02234 | . | 670 | 890 | AGC Kinase gene family | AT3G17850 | 66.964 | 3.80e-98 | 310.0 | |
| Laca7g02517 | . | 895 | 1034 | AGC Kinase gene family | AT5G62310 | 67.857 | 2.55e-61 | 204.0 | |
| Laca7g02668 | . | 811 | 889 | AGC Kinase gene family | AT3G17850 | 79.012 | 4.20e-35 | 129.0 | |
| Laca7g02767 | ACH | 1 | 385 | AGC Kinase gene family | AT1G53700 | 63.131 | 7.85e-165 | 469.0 | |
| Laca7g03196 | ACH | 129 | 586 | AGC Kinase gene family | AT5G47750 | 71.739 | 0.0 | 669.0 | |
| Laca8g00032 | . | 1 | 1294 | AGC Kinase gene family | AT3G17850 | 61.825 | 0.0 | 1528.0 | |
| Laca8g00276 | . | 30 | 1161 | AGC Kinase gene family | AT5G62310 | 59.459 | 0.0 | 1304.0 | |
| Laca8g00366 | . | 1 | 466 | AGC Kinase gene family | AT3G08720 | 66.03 | 0.0 | 620.0 | |
| Laca8g00682 | . | 4 | 486 | AGC Kinase gene family | AT3G10540 | 76.375 | 0.0 | 775.0 | |
| Laca8g00781 | . | 1 | 328 | AGC Kinase gene family | AT3G08720 | 64.545 | 1.17e-148 | 424.0 | |
| Laca8g01090 | ACH | 308 | 337 | AGC Kinase gene family | AT3G08720 | 80.0 | 1.21e-10 | 58.9 | |
| Laca8g01591 | . | 119 | 491 | AGC Kinase gene family | AT5G58140 | 31.675 | 2.88e-56 | 197.0 | |
| Laca8g01783 | . | 1 | 517 | AGC Kinase gene family | AT2G20470 | 78.227 | 0.0 | 840.0 | |
| Laca8g01875 | ACH | 5 | 392 | AGC Kinase gene family | AT3G25250 | 58.519 | 1.47e-160 | 456.0 | |
| Laca8g03701 | . | 11 | 525 | AGC Kinase gene family | AT2G26700 | 59.091 | 0.0 | 575.0 | |
| Laca8g04292 | . | 325 | 369 | AGC Kinase gene family | AT3G08720 | 67.391 | 1.40e-09 | 58.2 | |
| Laca8g04302 | . | 811 | 890 | AGC Kinase gene family | AT3G17850 | 79.268 | 1.09e-36 | 132.0 | |
| Laca9g00016 | . | 304 | 369 | AGC Kinase gene family | AT3G08720 | 74.627 | 1.63e-26 | 100.0 | |
| Laca9g00331 | . | 1 | 564 | AGC Kinase gene family | AT2G20470 | 73.898 | 0.0 | 847.0 | |
| Laca9g00466 | ACH | 9 | 372 | AGC Kinase gene family | AT4G13000 | 53.528 | 7.60e-146 | 417.0 | |
| Laca9g01198 | . | 1 | 469 | AGC Kinase gene family | AT3G08720 | 60.934 | 0.0 | 567.0 | |
| Laca9g01203 | . | 856 | 1043 | AGC Kinase gene family | AT5G62310 | 24.878 | 2.14e-09 | 55.5 | |
| Laca9g01598 | . | 1 | 1294 | AGC Kinase gene family | AT3G17850 | 62.17 | 0.0 | 1476.0 | |
| Laca9g01661 | . | 276 | 334 | AGC Kinase gene family | AT3G08720 | 79.661 | 4.01e-28 | 108.0 | |
| Laca9g01808 | . | 1020 | 1146 | AGC Kinase gene family | AT3G17850 | 43.478 | 5.23e-26 | 100.0 | |
| Laca9g02563 | . | 110 | 555 | AGC Kinase gene family | AT1G79250 | 72.549 | 0.0 | 673.0 | |
| Laca9g02721 | . | 276 | 340 | AGC Kinase gene family | AT3G08720 | 73.846 | 4.30e-28 | 107.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Laca | Pkinase | 6.4e-31 | CL0016 | PK | AGC_RSK-2 |