AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Laca7g03201 | ATGCCGACTTTATTTTCTCAATCAAAAAAGAGAAAAATGTTGTCGGATGTACATTTGGAGAAGATTGTGCACACGTACAACATTGACATTGCCCCCTACGATTTGGTCTCGGAAGAAAGTCAATCATCGAGTCAATGCATGAGAAATATGGCAGATTCAATTGCATCTGTAGAAGCCATATTGAGGTATAAATTCAATAACAGAAGTTTGTTGGAAGCAGCCCTAACTCATACTTCATACACTGAGTCTGAGTCCTACCAACGTCTCGAACTCCTTGGTGATGCTGTTGTTGGACTTGTCATCACAATTTTCTTTTACTTGGCTTACCCTGATGTTGACCCTGGTCAAATCTCTCTCCTCCGCTCTGCCAATATTAGTACCGAAAAACTTGCACGTGTGGCTGTTCGCAACGGGCTTTACAAATATGTCCGCCACAAAACCATCCTTCTCAATGATAAGGTTAGGAAATTTGTGATTGCGGTTGAAGATGAAGATGAGATGGTGGTGCATGGTGGGCAAATGAAAGCTCCAAAGGTGCTTGCTGATATTGTTGAATCGGTTGTTGGTGCTGTTTATGTAGATTGTGGGTTCTGTTTGCAAAGCCTGTGGATGATAATTAGAGAGCTACTTGAACCGATGGTTATGCTAGATGTTCTCGAGAAACAGCCGCAGCCTATTACCATGCTATACGAGGCATGCCAAAAAGAGGGGAAATTTGTTGACATAAAGAATTGGAGGAAAGGTGAGAGAAACATCGCAAGTGTTTATGTAGATGGAAGATTTATTGCCTCTGGCTCTTCAGAGAACAAAGAGAATGCTAAGCTTCATGCAGCTGAGGTTGCTCTATCAAAGTTAACAAGGCTAAAAAGCACGGATGCAATAAGTAGTAGTAGCCTACACATGAACATGATGTATCCTGATTGTTACAAGAGTGAATGCAGCAGGGACATGGAAAATTCCATTGGAGCTGTAGAAGCCATATTGAGGTACAACTTCAAGAGGAAAAGTTTGTTGGAAGCAGCCCTAACTCATTCTTCTTACACCGAGTCTCAATCCTACCAACGTCTGGAAATCCTGGGTGATTCTGTTCTTCGACTTGCCATCACTAATTTTATCTACTTGGCGTACCCTGATGTTGACCCTGGTCAAATCTCTCTCCTCCGTGCTGCCAACATTAGTACTGAAAAACTTGCACGCGTGGCGGTCCACAATGGGCTTTACAAATATGTCCGCCACAAAACCGTTGTTCTGAATGATAAGGTTAGGGAATTTGTGATTGTGGTCGAAGAAGAAGAAGAAGATGAGATGGTGGTCCACGGTGGACAGATGAAAGCTCCAAAGGTGCTTGCTGATATTGTTGAATCGGTTGCTGGAGCTGTATTTGAAGATTGTGATTTCAATTTGCAAATCCTGTGGGTGGTAATTAGAGAGCTACTTGAGCCGATGGTTATGTTAAATGTTCTTGAGAAACAGCCACAGCCTATTACCATGCTATATGAGGCATGCCAAAAAGAGGGGAAAATTGTTGACATAAAGAATTGGAGGAAAGGTGAAAGAAACATTGCAAGTGTTTATGTTGATGGAAAGTTTATTGCCTCTAGCTCTTCAGAGAACAAAGAGAATGCTAAGCTTCATGCAGCTGAGGTTGCTCTATCTAAGTTAACAAGGCTAAAAAGCACTGATGCAATGAAAGATGATTCTGGTGAAGCCACTGAGATTAAAGGTGCAAAACGAAAAATACATGAACTTTGTAACAGGAGAAGGTGGCCAAAAGCGACTTACAGAGTTGAGCAAGAATCGGGTCCTGCACACAATAGAAGATATATAGCATCCGTGCAAATTGAACTTTCTGGTAAGATATTTTTCATGAAGGGAGAAGAGAGGTCAAAAGTCAAGGATGCAGAAAATTCTGCAGCTTCATCTATGTTTTATTCTTTACGAGAATTGGGATATTAA | 1956 | 41.46 | MPTLFSQSKKRKMLSDVHLEKIVHTYNIDIAPYDLVSEESQSSSQCMRNMADSIASVEAILRYKFNNRSLLEAALTHTSYTESESYQRLELLGDAVVGLVITIFFYLAYPDVDPGQISLLRSANISTEKLARVAVRNGLYKYVRHKTILLNDKVRKFVIAVEDEDEMVVHGGQMKAPKVLADIVESVVGAVYVDCGFCLQSLWMIIRELLEPMVMLDVLEKQPQPITMLYEACQKEGKFVDIKNWRKGERNIASVYVDGRFIASGSSENKENAKLHAAEVALSKLTRLKSTDAISSSSLHMNMMYPDCYKSECSRDMENSIGAVEAILRYNFKRKSLLEAALTHSSYTESQSYQRLEILGDSVLRLAITNFIYLAYPDVDPGQISLLRAANISTEKLARVAVHNGLYKYVRHKTVVLNDKVREFVIVVEEEEEDEMVVHGGQMKAPKVLADIVESVAGAVFEDCDFNLQILWVVIRELLEPMVMLNVLEKQPQPITMLYEACQKEGKIVDIKNWRKGERNIASVYVDGKFIASSSSENKENAKLHAAEVALSKLTRLKSTDAMKDDSGEATEIKGAKRKIHELCNRRRWPKATYRVEQESGPAHNRRYIASVQIELSGKIFFMKGEERSKVKDAENSAASSMFYSLRELGY | 651 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Laca7g03201 | 651 | SMART | riboneu5 | 69 | 219 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Laca7g03201 | 651 | SMART | riboneu5 | 336 | 488 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Laca7g03201 | 651 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 480 | 556 | IPR014720 | - | |
| Laca7g03201 | 651 | SUPERFAMILY | dsRNA-binding domain-like | 447 | 558 | - | - | |
| Laca7g03201 | 651 | SMART | DRBM-3 | 576 | 647 | IPR014720 | - | |
| Laca7g03201 | 651 | SMART | DRBM-3 | 494 | 555 | IPR014720 | - | |
| Laca7g03201 | 651 | SMART | DRBM-3 | 225 | 286 | IPR014720 | - | |
| Laca7g03201 | 651 | Pfam | Double-stranded RNA binding motif | 494 | 554 | IPR014720 | - | |
| Laca7g03201 | 651 | Pfam | Double-stranded RNA binding motif | 576 | 642 | IPR014720 | - | |
| Laca7g03201 | 651 | Pfam | Double-stranded RNA binding motif | 225 | 285 | IPR014720 | - | |
| Laca7g03201 | 651 | ProSiteProfiles | Ribonuclease III family domain profile. | 54 | 196 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Laca7g03201 | 651 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 575 | 648 | IPR014720 | - | |
| Laca7g03201 | 651 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 211 | 287 | IPR014720 | - | |
| Laca7g03201 | 651 | SUPERFAMILY | dsRNA-binding domain-like | 178 | 303 | - | - | |
| Laca7g03201 | 651 | FunFam | Endoribonuclease dicer-like 1 | 315 | 486 | - | - | |
| Laca7g03201 | 651 | ProSiteProfiles | Ribonuclease III family domain profile. | 321 | 465 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Laca7g03201 | 651 | Gene3D | Ribonuclease III domain | 310 | 486 | IPR036389 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Laca7g03201 | 651 | Gene3D | Ribonuclease III domain | 41 | 216 | IPR036389 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Laca7g03201 | 651 | SUPERFAMILY | RNase III domain-like | 52 | 213 | IPR036389 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Laca7g03201 | 651 | SUPERFAMILY | dsRNA-binding domain-like | 574 | 649 | - | - | |
| Laca7g03201 | 651 | Gene3D | - | 489 | 568 | - | - | |
| Laca7g03201 | 651 | Gene3D | - | 220 | 298 | - | - | |
| Laca7g03201 | 651 | PANTHER | DICER-RELATED | 312 | 628 | - | GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER) | |
| Laca7g03201 | 651 | CDD | DSRM-EIF2AK2-like | 224 | 285 | - | - | |
| Laca7g03201 | 651 | CDD | RIBOc | 336 | 483 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Laca7g03201 | 651 | Pfam | Ribonuclease III domain | 354 | 464 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Laca7g03201 | 651 | Pfam | Ribonuclease III domain | 87 | 196 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Laca7g03201 | 651 | CDD | RIBOc | 69 | 214 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Laca7g03201 | 651 | FunFam | Endoribonuclease dicer-like 1 | 48 | 217 | - | - | |
| Laca7g03201 | 651 | SUPERFAMILY | RNase III domain-like | 318 | 482 | IPR036389 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Laca7g03201 | 651 | Gene3D | - | 581 | 648 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Laca7g03201 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Laca | Laca-Chr7:124842924 | Laca7g03201 | Laca-Chr7:149575493 | dispersed | |
| Laca | Laca-Chr7:149575493 | Laca8g02438 | Laca-Chr8:83953812 | dispersed | |
| Laca | Laca-Chr3:12205965 | Laca7g03201 | Laca-Chr7:149575493 | transposed | |
| Laca | Laca-Chr5:187602822 | Laca7g03201 | Laca-Chr7:149575493 | wgd |