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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03205 ATGTCTTCCTCTACGTTTTCTACACATGGCGCCACACTAGCTCCTGAACAAAGGAAGACCTTTGGTGATTCAAATAACTCAGATGTCTTCCATAACAAGAAGAACCATGTATCGATGAGCTGTCCTAACAATGGAAGGCTGATATCCAAGGATAGAATCCAATGTAAAGCAGTAGAGGTCAAAAGCCACCACACTTTCTTGAAGGGAGAAAAATTTCAACTTGAAGATGTGATTGAGGCACAGCAATTTGATAGAGATACCCTGAGTGCCATATTTGAAGTGGCACGTGAAATGGAAACAATTGAGAAGAAGTCACAATCACATGGAAGTCAGCTTTTGAGTGGTTATCTAATGGCTACTCTCTTTTACGAGCCTTCAACAAGAACCAGGCTTTCGTTTGAGTCAGCAATGAAGCGCTTAGGTGGCGAAGTTTTAACAACAGAAAACGCACGTGAATTCTCTTCTGCTGCAAAGGGAGAAACACTTGAAGATTCTATTAGAACTGTGGAAGGGTATTCGGATATTATTGTGATGAGGCATTTTGAAAGCGGTGCTGCCAGAAGAGCAGCCATGACAGCTAACATTCCTGTTATCAATGCTGGGGATGGTCCAGGTCAGCATCCTACTCAGGCTCTTCTTGATGTGTACACCATTGAAAGAGAGATAGGAAAGCTGGATGGAATCAAAGTCGCACTTGTTGGTGATCTTGCAAATGGGCGAACAGTTCGCTCTCTTGCATATCTTTTAGCCAAATACAATGATGTCAAGATCTACTTTGTCTCACCAGAAGTCGTAAAGATGAAGGAGGACATCAAAGAGTACTTAACATTAAAGGGAGTTGAATGGGAAGAAAGTGCAGATTTGAAGGAAGTGGCATCGAAATGTGATGTGGTGTATCAGACTCGCATCCAGAAGGAACGTTTTGGAGAGAGAAGAGATCTTTATGAGGAAGCTCGTGGGAAATACATTACTGATAGAGATGTGTTGGGTGTCATGCAGAAACATGCCATTGTCATGCATCCTCTCCCAAGGCTTGATGAGATAACAGTGGATGTAGATGGGGACCCAAGGGCTGCTTATTTTAGACAAGCTAAAAATGGACTCTACATTAGAATGGCTTTGCTCAAGCTCTTACTTGTTGGTTGGATTGATATTAAAGCAGACTTATTTTCATCAAGTATCGGACATGGTGTTATCTCTTCAAAGAGGGAAATCGTTATCATCACCTTCTCCAAGAGTACACAATCCGTGAATGTACGACAAACAGTTAAAAGACCTGACATCATAAAATATTCGTTTTCAAAATAA 1308 41.44 MSSSTFSTHGATLAPEQRKTFGDSNNSDVFHNKKNHVSMSCPNNGRLISKDRIQCKAVEVKSHHTFLKGEKFQLEDVIEAQQFDRDTLSAIFEVAREMETIEKKSQSHGSQLLSGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDSIRTVEGYSDIIVMRHFESGAARRAAMTANIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVALVGDLANGRTVRSLAYLLAKYNDVKIYFVSPEVVKMKEDIKEYLTLKGVEWEESADLKEVASKCDVVYQTRIQKERFGERRDLYEEARGKYITDRDVLGVMQKHAIVMHPLPRLDEITVDVDGDPRAAYFRQAKNGLYIRMALLKLLLVGWIDIKADLFSSSIGHGVISSKREIVIITFSKSTQSVNVRQTVKRPDIIKYSFSK 435
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03205 435 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 344 367 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Laca7g03205 435 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 334 343 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Laca7g03205 435 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 122 141 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Laca7g03205 435 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 207 218 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Laca7g03205 435 Gene3D Aspartate-ornithine carbamoyltransferase 77 375 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Laca7g03205 435 PRINTS Aspartate carbamoyltransferase signature 152 161 - -
Laca7g03205 435 PRINTS Aspartate carbamoyltransferase signature 206 223 - -
Laca7g03205 435 PRINTS Aspartate carbamoyltransferase signature 298 307 - -
Laca7g03205 435 PRINTS Aspartate carbamoyltransferase signature 112 134 - -
Laca7g03205 435 PRINTS Aspartate carbamoyltransferase signature 338 343 - -
Laca7g03205 435 PRINTS Aspartate carbamoyltransferase signature 360 374 - -
Laca7g03205 435 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 122 129 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Laca7g03205 435 MobiDBLite consensus disorder prediction 1 34 - -
Laca7g03205 435 Pfam Aspartate-ornithine carbamoyltransferase, carbamoyl-P binding domain 76 219 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Laca7g03205 435 Hamap Aspartate carbamoyltransferase [pyrB]. 74 381 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Laca7g03205 435 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 69 380 - -
Laca7g03205 435 FunFam Aspartate carbamoyltransferase 76 210 - -
Laca7g03205 435 Pfam Aspartate-ornithine carbamoyltransferase, Asp-Orn binding domain 226 377 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Laca7g03205 435 FunFam Aspartate carbamoyltransferase 2 211 366 - -
Laca7g03205 435 NCBIfam aspartate carbamoyltransferase 76 379 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Laca7g03205 435 SUPERFAMILY Aspartate-ornithine carbamoyltransferase 72 379 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Laca7g03205 435 Gene3D Aspartate-ornithine carbamoyltransferase 207 366 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03205 K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr5:3628867 Laca7g03205 Laca-Chr7:149710710 dispersed
Laca Laca-Chr6:29529679 Laca7g03205 Laca-Chr7:149710710 dispersed
Laca Laca-Chr7:71566911 Laca7g03205 Laca-Chr7:149710710 dispersed