AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Laca7g03217 | ATGGACGTCAACCTGAACCTCGATACTCAGGTCGTGCCCATCACCTTGTTCGTAGCTGTGCTCTGTCTGTGCTTGGTAATCGGCCACTTGCTTGACGAGAATCGTTGGGTTAATGAGTCCATCACCGCCATCATCATCGGGTGTGTTGTTGGGACAATCATCTTAATCATAAGCAACTGGAAAAGCAGTCATTTTCTGAGATTTCAGGTCAAGAAGAAAAAGTTTTTCCAAAACTTTTTGCCGATTATGTTGTTCGGAGTCACTGGTGTTTTCATATCAACATCGATCGTCGCCGCTGGTTGCTGGTGGGTGTTTCCGAAATTTGGACTCAAGGGTTTGACAATCAGCGAGTATCTTAGTTTAGGGACCATTTTCTCATCTACAGATACTGTATGTACGTTACAGGTTTTGCACCAAGACGAGACTCCTTTGCTATACAGTCTAGTTTTTGGTGAAGGAGTAGTTAATGATGCGACATCCGTTGTTCTGTTCAATGCGGTTCAGAAGATCAATGCAGATACACTCGGTGGGAAGGCTGCTCTTCGCATCTTGCTTGATTTCTTGTATTTGTTCTCCACCAGCACCATTCTTGGAGTCACGGCTGGGCTATTGACATCATATATTCTTAGAGGATTGGGCATTGGCAGGCATTCAAGTGTTCGTGAAATCGCTTTGATGATTTTAATTGCATATTTGTCCTACATGTTGGCAGAGCTGTTAGAACTCAGTGGGATTCTGACTGTCTTCTTTGCTGGAGTTTTGATGTCACACTATGCATGGCATAACGTAACAGAAAGCTCCAGAATTACTACCAAGCATACTTTTGCAGCCATGTCTTTTATTGCAGAAACATTCATATTCCTGTATGTGGGAATGGATGCTCTGGACTATGAGCAATGGAAAATGAGCATATTAAGTTTCTGGGCTTCAATTGGCATGTATAGCAGTGTGATGTTGTTAATATTGGTTGGACGTGCTGCTTTTGTGTTTCCCCTCTCTGTTATTTCTAATTACATGAATCGAGTTGGGGATGGTTCATCAAAGATTACAGCAAAACACCAGGTAGTAATATGGTGGGCTGGTCTGATGAGAGGTGCTGTCTCTGTCGCTTTGGCATTTAAACAGTTTACACTCTCTGGTGTGACACTGGATCCGATTGATGCCACAATGATCACCACTACCATTGTGGTAGTGCTATTCAGTACTATTGTTTTTGGTTTCTTGACAAAACCTCTTATCAGTTACCTACTTCCTCCTAACACAAGCAACATCGACCGAACTAGATCTTTAAAAGAGGATATGACACTTCCATTGCTTTCTTTCGAAGAATCGGCTTCTGAAAAATCTATCTAG | 1353 | 42.35 | MDVNLNLDTQVVPITLFVAVLCLCLVIGHLLDENRWVNESITAIIIGCVVGTIILIISNWKSSHFLRFQVKKKKFFQNFLPIMLFGVTGVFISTSIVAAGCWWVFPKFGLKGLTISEYLSLGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKINADTLGGKAALRILLDFLYLFSTSTILGVTAGLLTSYILRGLGIGRHSSVREIALMILIAYLSYMLAELLELSGILTVFFAGVLMSHYAWHNVTESSRITTKHTFAAMSFIAETFIFLYVGMDALDYEQWKMSILSFWASIGMYSSVMLLILVGRAAFVFPLSVISNYMNRVGDGSSKITAKHQVVIWWAGLMRGAVSVALAFKQFTLSGVTLDPIDATMITTTIVVVLFSTIVFGFLTKPLISYLLPPNTSNIDRTRSLKEDMTLPLLSFEESASEKSI | 450 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Laca7g03217 | 450 | PANTHER | SODIUM-HYDROGEN EXCHANGER | 12 | 417 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Laca7g03217 | 450 | Pfam | Sodium-hydrogen exchanger family | 69 | 413 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Laca7g03217 | 450 | Gene3D | - | 114 | 166 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Laca7g03217 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 116451 | Laca7g03217 | Laca9g02953 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Laca | Laca-Chr5:257346420 | Laca7g03217 | Laca-Chr7:150052229 | dispersed | |
| Laca | Laca-Chr7:108292436 | Laca7g03217 | Laca-Chr7:150052229 | dispersed | |
| Laca | Laca-Chr4:73237111 | Laca7g03217 | Laca-Chr7:150052229 | transposed | |
| Laca | Laca-Chr7:150052229 | Laca9g02953 | Laca-Chr9:119963274 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lacanog00671 | . | 30 | 277 | Antiporters gene family | AT1G79900 | 35.036 | 1.17e-43 | 150.0 | |
| Lacanog01073 | . | 277 | 436 | Antiporters gene family | AT1G55730 | 63.125 | 4.10e-59 | 197.0 | |
| Lacanog01291 | . | 130 | 182 | Antiporters gene family | AT5G25430 | 69.811 | 6.16e-17 | 81.3 | |
| Lacanog02026 | . | 166 | 379 | Antiporters gene family | AT1G15460 | 80.841 | 1.02e-124 | 366.0 | |
| Lacanog02452 | . | 30 | 283 | Antiporters gene family | AT1G79900 | 28.044 | 2.67e-29 | 110.0 | |
| Lacanog03023 | . | 59 | 563 | Antiporters gene family | AT5G64290 | 79.802 | 0.0 | 817.0 | |
| Lacanog04498 | . | 172 | 664 | Antiporters gene family | AT1G15460 | 67.535 | 0.0 | 699.0 | |
| Lacanog04943 | . | 256 | 414 | Antiporters gene family | AT5G25430 | 69.182 | 5.70e-73 | 234.0 | |
| Lacanog05378 | . | 1 | 436 | Antiporters gene family | AT1G55730 | 67.5 | 0.0 | 592.0 | |
| Lacanog05586 | . | 48 | 576 | Antiporters gene family | AT3G19490 | 75.187 | 0.0 | 736.0 | |
| Lacanog05916 | . | 256 | 414 | Antiporters gene family | AT5G25430 | 69.182 | 1.38e-73 | 233.0 | |
| Lacanog06448 | . | 22 | 162 | Antiporters gene family | AT2G47160 | 64.539 | 2.65e-54 | 193.0 | |
| Laca1g00801 | ACH | 40 | 404 | Antiporters gene family | AT5G33320 | 64.69 | 7.87e-161 | 457.0 | |
| Laca1g00803 | . | 20 | 404 | Antiporters gene family | AT5G33320 | 61.697 | 4.04e-160 | 455.0 | |
| Laca1g01027 | ACH | 6 | 672 | Antiporters gene family | AT1G15460 | 70.431 | 0.0 | 996.0 | |
| Laca1g01063 | ACH | 1 | 285 | Antiporters gene family | AT1G79900 | 63.448 | 2.07e-129 | 368.0 | |
| Laca1g01145 | . | 32 | 566 | Antiporters gene family | AT5G17860 | 41.623 | 2.33e-148 | 439.0 | |
| Laca1g01199 | ACH | 28 | 439 | Antiporters gene family | AT3G13320 | 63.484 | 0.0 | 522.0 | |
| Laca1g01285 | . | 9 | 664 | Antiporters gene family | AT5G25430 | 63.008 | 0.0 | 887.0 | |
| Laca1g01677 | ACH | 1 | 818 | Antiporters gene family | AT3G53720 | 57.799 | 0.0 | 827.0 | |
| Laca1g02025 | . | 1 | 557 | Antiporters gene family | AT5G12860 | 82.011 | 0.0 | 889.0 | |
| Laca1g02030 | . | 1 | 385 | Antiporters gene family | AT5G13490 | 77.403 | 0.0 | 585.0 | |
| Laca1g02645 | . | 58 | 372 | Antiporters gene family | AT5G13490 | 54.154 | 1.35e-99 | 299.0 | |
| Laca1g02876 | . | 468 | 545 | Antiporters gene family | AT4G32510 | 70.513 | 4.02e-30 | 119.0 | |
| Laca1g03202 | . | 24 | 801 | Antiporters gene family | AT3G52080 | 44.174 | 0.0 | 687.0 | |
| Laca1g03233 | ACH | 64 | 384 | Antiporters gene family | AT5G13490 | 88.162 | 0.0 | 556.0 | |
| Laca2g00835 | . | 346 | 478 | Antiporters gene family | AT5G51710 | 57.143 | 3.98e-39 | 138.0 | |
| Laca2g01542 | . | 16 | 334 | Antiporters gene family | AT1G08960 | 57.704 | 8.62e-112 | 338.0 | |
| Laca2g01864 | . | 9 | 810 | Antiporters gene family | AT2G13620 | 71.731 | 0.0 | 1159.0 | |
| Laca2g01910 | . | 2 | 776 | Antiporters gene family | AT1G16380 | 39.317 | 0.0 | 556.0 | |
| Laca2g02369 | . | 64 | 377 | Antiporters gene family | AT3G01550 | 72.698 | 5.63e-159 | 451.0 | |
| Laca2g02685 | ACH | 44 | 567 | Antiporters gene family | AT5G17860 | 47.753 | 1.98e-163 | 475.0 | |
| Laca2g02946 | ACH | 1 | 822 | Antiporters gene family | AT3G53720 | 66.262 | 0.0 | 1029.0 | |
| Laca3g00227 | . | 179 | 213 | Antiporters gene family | AT1G74810 | 54.286 | 1.65e-06 | 44.3 | |
| Laca3g00262 | ACH | 4 | 795 | Antiporters gene family | AT4G23700 | 64.439 | 0.0 | 1016.0 | |
| Laca3g00483 | . | 30 | 283 | Antiporters gene family | AT1G79900 | 34.737 | 1.35e-43 | 149.0 | |
| Laca3g00702 | . | 77 | 366 | Antiporters gene family | AT4G28390 | 39.456 | 6.00e-61 | 197.0 | |
| Laca3g00769 | . | 5 | 543 | Antiporters gene family | AT3G05030 | 73.297 | 0.0 | 817.0 | |
| Laca3g02475 | . | 285 | 319 | Antiporters gene family | AT5G11800 | 74.286 | 9.04e-08 | 52.0 | |
| Laca3g03188 | . | 249 | 320 | Antiporters gene family | AT1G15460 | 42.105 | 3.76e-08 | 50.1 | |
| Laca4g00296 | . | 83 | 410 | Antiporters gene family | AT5G46110 | 78.402 | 0.0 | 550.0 | |
| Laca4g01271 | ACH | 1 | 385 | Antiporters gene family | AT5G13490 | 78.608 | 0.0 | 594.0 | |
| Laca4g01785 | . | 18 | 475 | Antiporters gene family | AT3G05030 | 30.303 | 2.20e-47 | 172.0 | |
| Laca4g02125 | ACH | 1 | 687 | Antiporters gene family | AT3G62270 | 75.575 | 0.0 | 1083.0 | |
| Laca4g02923 | ACH | 1 | 292 | Antiporters gene family | AT1G79900 | 69.36 | 5.75e-145 | 408.0 | |
| Laca4g02980 | . | 10 | 672 | Antiporters gene family | AT1G15460 | 70.746 | 0.0 | 987.0 | |
| Laca4g02983 | ACH | 10 | 673 | Antiporters gene family | AT1G15460 | 72.578 | 0.0 | 1014.0 | |
| Laca4g03207 | . | 6 | 302 | Antiporters gene family | AT5G17400 | 75.758 | 1.79e-165 | 463.0 | |
| Laca4g03528 | . | 132 | 207 | Antiporters gene family | AT1G08960 | 60.526 | 6.62e-17 | 78.2 | |
| Laca4g03750 | . | 278 | 320 | Antiporters gene family | AT5G11800 | 67.442 | 1.16e-11 | 60.5 | |
| Laca4g03991 | . | 277 | 316 | Antiporters gene family | AT5G11800 | 65.0 | 1.65e-08 | 52.8 | |
| Laca4g03997 | . | 154 | 436 | Antiporters gene family | AT1G55730 | 70.877 | 3.21e-143 | 420.0 | |
| Laca4g04503 | . | 372 | 429 | Antiporters gene family | AT1G55730 | 74.138 | 7.89e-24 | 97.8 | |
| Laca5g00114 | . | 21 | 388 | Antiporters gene family | AT1G61800 | 73.228 | 0.0 | 558.0 | |
| Laca5g00397 | ACH | 1 | 408 | Antiporters gene family | AT5G33320 | 66.506 | 0.0 | 515.0 | |
| Laca5g00399 | ACH | 401 | 671 | Antiporters gene family | AT3G62270 | 59.124 | 2.54e-106 | 321.0 | |
| Laca5g00400 | . | 1 | 687 | Antiporters gene family | AT3G62270 | 73.362 | 0.0 | 1065.0 | |
| Laca5g00622 | . | 285 | 319 | Antiporters gene family | AT5G11800 | 77.143 | 1.34e-08 | 53.5 | |
| Laca5g00844 | . | 278 | 319 | Antiporters gene family | AT5G11800 | 66.667 | 3.75e-09 | 56.2 | |
| Laca5g00873 | . | 33 | 1142 | Antiporters gene family | AT2G01980 | 62.867 | 0.0 | 1358.0 | |
| Laca5g01265 | . | 14 | 540 | Antiporters gene family | AT3G05030 | 76.091 | 0.0 | 828.0 | |
| Laca5g01430 | . | 65 | 414 | Antiporters gene family | AT5G17630 | 79.661 | 0.0 | 556.0 | |
| Laca5g02566 | . | 51 | 567 | Antiporters gene family | AT5G17860 | 43.091 | 3.41e-140 | 417.0 | |
| Laca5g02603 | . | 181 | 329 | Antiporters gene family | AT1G15460 | 59.06 | 8.07e-50 | 168.0 | |
| Laca5g02604 | . | 487 | 611 | Antiporters gene family | AT1G15460 | 68.8 | 5.19e-59 | 192.0 | |
| Laca5g03332 | . | 279 | 356 | Antiporters gene family | AT5G11800 | 52.5 | 1.22e-11 | 61.2 | |
| Laca5g03408 | . | 26 | 563 | Antiporters gene family | AT5G64290 | 74.349 | 0.0 | 793.0 | |
| Laca5g03714 | . | 6 | 448 | Antiporters gene family | AT3G51860 | 63.677 | 0.0 | 539.0 | |
| Laca5g04401 | ACH | 26 | 445 | Antiporters gene family | AT2G38170 | 59.62 | 3.17e-168 | 479.0 | |
| Laca5g04910 | . | 27 | 534 | Antiporters gene family | AT3G05030 | 63.458 | 0.0 | 667.0 | |
| Laca5g04946 | . | 6 | 539 | Antiporters gene family | AT2G47600 | 66.171 | 0.0 | 714.0 | |
| Laca6g00389 | . | 37 | 584 | Antiporters gene family | AT2G19600 | 79.496 | 0.0 | 854.0 | |
| Laca6g00883 | ACH | 67 | 566 | Antiporters gene family | AT5G17860 | 49.307 | 8.19e-171 | 493.0 | |
| Laca6g00884 | ACH | 67 | 566 | Antiporters gene family | AT5G17860 | 50.394 | 3.40e-173 | 500.0 | |
| Laca6g01273 | . | 264 | 311 | Antiporters gene family | AT2G19600 | 54.167 | 1.47e-07 | 50.1 | |
| Laca6g01329 | . | 1 | 385 | Antiporters gene family | AT5G13490 | 80.0 | 0.0 | 591.0 | |
| Laca6g02295 | ACH | 1 | 795 | Antiporters gene family | AT4G23700 | 62.703 | 0.0 | 989.0 | |
| Laca7g01006 | . | 285 | 319 | Antiporters gene family | AT5G11800 | 74.286 | 5.29e-08 | 52.0 | |
| Laca7g01011 | . | 2 | 385 | Antiporters gene family | AT5G13490 | 77.778 | 0.0 | 582.0 | |
| Laca7g01089 | . | 44 | 586 | Antiporters gene family | AT2G19600 | 82.545 | 0.0 | 868.0 | |
| Laca7g01500 | . | 30 | 277 | Antiporters gene family | AT1G79900 | 32.967 | 1.40e-32 | 120.0 | |
| Laca7g02252 | . | 211 | 296 | Antiporters gene family | AT5G55470 | 68.605 | 1.30e-33 | 120.0 | |
| Laca7g02560 | ACH | 259 | 402 | Antiporters gene family | AT5G25430 | 70.139 | 1.17e-62 | 214.0 | |
| Laca7g03217 | ACH | 19 | 481 | Antiporters gene family | AT5G55470 | 66.307 | 0.0 | 617.0 | |
| Laca8g00253 | . | 21 | 566 | Antiporters gene family | AT5G51710 | 77.473 | 0.0 | 852.0 | |
| Laca8g02409 | ACH | 40 | 436 | Antiporters gene family | AT2G38170 | 63.158 | 3.27e-174 | 494.0 | |
| Laca8g02864 | . | 468 | 508 | Antiporters gene family | AT4G32510 | 70.732 | 5.82e-14 | 69.7 | |
| Laca8g03037 | . | 6 | 442 | Antiporters gene family | AT3G51860 | 71.558 | 0.0 | 584.0 | |
| Laca8g03126 | . | 339 | 429 | Antiporters gene family | AT1G55730 | 52.577 | 9.62e-25 | 101.0 | |
| Laca8g03187 | . | 14 | 793 | Antiporters gene family | AT1G06970 | 35.939 | 2.10e-170 | 511.0 | |
| Laca8g03609 | . | 105 | 286 | Antiporters gene family | AT5G25430 | 52.151 | 5.59e-56 | 189.0 | |
| Laca8g04514 | . | 346 | 478 | Antiporters gene family | AT5G51710 | 47.368 | 3.35e-27 | 106.0 | |
| Laca9g00027 | . | 1 | 697 | Antiporters gene family | AT2G47160 | 79.577 | 0.0 | 1137.0 | |
| Laca9g01863 | . | 312 | 436 | Antiporters gene family | AT1G55730 | 64.8 | 4.47e-45 | 156.0 | |
| Laca9g02953 | ACH | 9 | 529 | Antiporters gene family | AT5G55470 | 68.582 | 0.0 | 742.0 | |
| Laca9g03035 | . | 17 | 387 | Antiporters gene family | AT5G54800 | 76.517 | 0.0 | 559.0 | |
| Laca9g03311 | . | 11 | 436 | Antiporters gene family | AT1G55730 | 61.502 | 0.0 | 520.0 |