AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03221 ATGGCACAAAGTTTCCTCCAAAACTCCATCTTCGATCTTGGACACAATTATTATCATGTTCAGACAACAGATGAATTGAACTTATTAGTTAAGGAGTTAAAGTTGATTCTCTATGGTGATGACAACTCTGAGCCTTGTGAGGAAGCATGTGCACAGTTGACTGAGCAATTCTTTAGAGAAGACATAATGCGTCTTCTCATTATCTTTCTTCCCAAGTTGAACTTGGAGGCACGTAAAGATGCAACCCAAGTTGTTGCAAGTTTGCAAAGGCAACCCTTGCCATCACGTTTCCAAGCTTCCAAATATTTAGAATCCAATCTAGATCTTGTTGATATTCTAATATCCGGTTATGAAGATCCTTTATTAGCTCTCCATTATGGAAGGATGTTAAAAGAGTGCCTACGTCATCAAGTTGTTGCTAGTTATATATTAGAACCAATTCAACTAAAGAAACTTTTTGGTTACATACAACTTCCAAGTTTCGATATTGCTGCAGATGCCACCGATACCTTCAAGGATCTATTGACTAGGCATAAGTCCACTGTATCCGAATCACTATCCAAAAACTATTCTTGGTTTTTTACAGAATTTAATGAGAAACTACTAAAATCATCAAACTATATCACTAAAAGACAAGCTGTTAAGTTATTAGGAAGCATAATGCTTGATCGTTCAAATTCTATCGTTATGAGACGCTATGTCAGTTCAAAAGACAATTTGATCATTCTAATGAATCTTCTAAGGGATACAAGTAGGAGCATCCAGATAGATGCTTTTCATGTGTTCAAGGTTTGGATACGTAAACTTATATACCTTTAA 819 35.78 MAQSFLQNSIFDLGHNYYHVQTTDELNLLVKELKLILYGDDNSEPCEEACAQLTEQFFREDIMRLLIIFLPKLNLEARKDATQVVASLQRQPLPSRFQASKYLESNLDLVDILISGYEDPLLALHYGRMLKECLRHQVVASYILEPIQLKKLFGYIQLPSFDIAADATDTFKDLLTRHKSTVSESLSKNYSWFFTEFNEKLLKSSNYITKRQAVKLLGSIMLDRSNSIVMRRYVSSKDNLIILMNLLRDTSRSIQIDAFHVFKVWIRKLIYL 272
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03221 272 Gene3D - 9 268 IPR011989 -
Laca7g03221 272 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 21 267 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
Laca7g03221 272 Pfam Mo25-like 21 266 IPR013878 -
Laca7g03221 272 SUPERFAMILY ARM repeat 23 267 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03221 K08272 calcium binding protein 39
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr7:150491948 Laca9g03377 Laca-Chr9:138468981 dispersed
Laca Laca-Chr5:188886671 Laca7g03221 Laca-Chr7:150491948 wgd