AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03222 ATGGTATTCTTATACGGACGAAGTGAAAGGCCAAACCTTGATCCTGACATTATGTCGTGTAGGGATTCTAAGGAGTATCTTATTTTAAGAGTTTCCTCCAAAACTCCATCTTTGGTCCTTGATAAATGTTCGAAGCAAGGTCTTCATAATTTGCCATGGAACTTCGACTCCCATCGTCAAAGGGTTTTCAAGATTGCTTGTTCGAGTGCTAAAGACACACATCAAAGTCCGATTACACTTGAGTTTTCAAACCCTAATAAAGCACTCAGGGCTTCGTCTTCCAAGATGGAAGCAATTCAATTTGATGAAAGAAGTAGCCCCTTTGAGGTGAAGAATGAGATTGAAATGTGCTATGAGCTGATACGCAGACTTGGGAGAGGCGTGGTGTACTTGGGTTCTGCAAGGATGGGGCCGGGACATGAGCATTATATCCAAACACAGGAATTGGCAAGAGAGGTTGCAAAGCTGTTGGGATGCACTTCATGGTCAGGGGCTGGACCAGGGCTGATGGATGCTGCAACTCGGGGCGCTCTGGAAGCAGGAAAGCCGGTTGGTGGATTCAAGATTGCTAAAGAAGCAGGGGAATGGACAGCAACTAATTTTCATCCGTATCTTCCTTCTCATGCTTACCTTACATGCAGGTTTTTTTCTGCAAGAAAGCATGGGTTGGTGGATGCAGCGGTTAGAAGTAGTAAAGGGGAGAAGACGGGTGTGATTGTGTTGCCAGGTGGGATTGGTACTCTGGATGAGGCTTTTGAGATTCTTGCACTCATCCAGTTAGAGAGGATAGGTTCTGCACTCCCTGTCCCTTTTGTTTTGATGAATTATGACTCCTTTTATTCCAAGCTTTTACAGTTTCTGGATGTCTGTCAAGATTGGGGGACTGTTTCCAAAGGAGAGGTTTCCTCCCTTTGGAAAGTATGTAACAACAACTCCGAAGCACTTGCATATCTTGCACAATTTTATAATCAATGCTAA 978 44.38 MVFLYGRSERPNLDPDIMSCRDSKEYLILRVSSKTPSLVLDKCSKQGLHNLPWNFDSHRQRVFKIACSSAKDTHQSPITLEFSNPNKALRASSSKMEAIQFDERSSPFEVKNEIEMCYELIRRLGRGVVYLGSARMGPGHEHYIQTQELAREVAKLLGCTSWSGAGPGLMDAATRGALEAGKPVGGFKIAKEAGEWTATNFHPYLPSHAYLTCRFFSARKHGLVDAAVRSSKGEKTGVIVLPGGIGTLDEAFEILALIQLERIGSALPVPFVLMNYDSFYSKLLQFLDVCQDWGTVSKGEVSSLWKVCNNNSEALAYLAQFYNQC 325
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03222 325 Gene3D - 106 325 - -
Laca7g03222 325 Pfam Possible lysine decarboxylase 170 317 IPR031100 -
Laca7g03222 325 SUPERFAMILY MCP-YpsA-like 106 318 - -
Laca7g03222 325 PANTHER EXPRESSED PROTEIN 97 319 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03222 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Laca Laca-Chr4:159115376 Laca7g03222 Laca-Chr7:150548312 dispersed
Laca Laca-Chr7:150548312 Laca8g04573 Laca-Chr8:235163100 dispersed