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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca8g01408 ATGCCAACTCTAACGAAGCTATACACGATGCAAGAAGCTTCAGAGCACAATTCCGCAGGCGATTGCTGGGTTGTTATCGATGGCAAGGTGTATGATGTGTCATCGTATCTGGAAGAACACCCAGGTGGAGATGATGTCCTCCTTCAGGTTACTGGGAAAGATGCTACTGATGAATTTGAAGATGCGGGGCATAGCAAAACTGCAAGGGAACTAATGGAAAGTTTTTTTGTTGGGGAGTTGGACACGTCAGACATCCCTCAGCTTGAAATTGTGTCTGAGAAGCAAGAAAATTACATTTTTGACCTTACTAAGCAATACTGGGCTGTTCCATTAGCAGCCATTGGCTTATCGGTGGTTGTCACCTTTTTGTACTTGCGCAAGAAGTAG 387 44.7 MPTLTKLYTMQEASEHNSAGDCWVVIDGKVYDVSSYLEEHPGGDDVLLQVTGKDATDEFEDAGHSKTARELMESFFVGELDTSDIPQLEIVSEKQENYIFDLTKQYWAVPLAAIGLSVVVTFLYLRKK 128
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca8g01408 128 Gene3D - 3 86 IPR036400 -
Laca8g01408 128 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Laca8g01408 128 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 89 IPR036400 -
Laca8g01408 128 SMART Cyt-b5-2 8 81 IPR001199 -
Laca8g01408 128 FunFam Cytochrome b5 type B 3 85 - -
Laca8g01408 128 Pfam Cytochrome b5-like Heme-Steroid binding domain 9 81 IPR001199 -
Laca8g01408 128 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Laca8g01408 128 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Laca8g01408 128 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Laca8g01408 128 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Laca8g01408 128 PANTHER CYTOCHROME B5 4 123 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Laca8g01408 128 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca8g01408 K23490 cytochrome b5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3739365 Laca Laca8g01408 Laca-Chr8:48397134 Laca8g01836 Laca-Chr8:62796126
3756967 Laca Laca8g01408 Laca-Chr8:48397134 Laca8g00128 Laca-Chr8:3851271
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lacanog00641 . 1 133 NADPH P450 reductases gene family AT5G53560 54.478 1.43e-46 145.0
Lacanog03748 . 2 120 NADPH P450 reductases gene family AT1G60660 65.546 4.49e-52 159.0
Lacanog06116 . 1 132 NADPH P450 reductases gene family AT5G53560 68.182 1.24e-65 196.0
Laca1g00001 . 1 137 NADPH P450 reductases gene family AT5G48810 48.905 6.75e-48 151.0
Laca1g00533 . 1 136 NADPH P450 reductases gene family AT5G48810 48.551 2.89e-46 145.0
Laca2g03685 ACH 1 132 NADPH P450 reductases gene family AT5G53560 70.455 2.90e-66 196.0
Laca4g02738 . 169 251 NADPH P450 reductases gene family AT5G17770 73.494 5.51e-36 134.0
Laca4g04811 . 31 281 NADPH P450 reductases gene family AT5G17770 82.213 7.96e-158 439.0
Laca5g02261 ACH 39 260 NADPH P450 reductases gene family AT5G17770 43.612 4.71e-62 197.0
Laca6g01638 . 5 132 NADPH P450 reductases gene family AT5G48810 43.165 6.55e-39 126.0
Laca7g02641 . 38 273 NADPH P450 reductases gene family AT5G17770 39.676 2.57e-48 171.0
Laca8g00128 ACH 1 133 NADPH P450 reductases gene family AT5G53560 71.429 1.65e-69 205.0
Laca8g01408 . 1 134 NADPH P450 reductases gene family AT1G26340 65.672 3.45e-61 182.0
Laca8g01836 . 5 133 NADPH P450 reductases gene family AT2G32720 74.419 5.18e-74 214.0
Laca8g01991 . 31 281 NADPH P450 reductases gene family AT5G17770 82.072 7.06e-157 440.0
Laca8g02790 ACH 39 281 NADPH P450 reductases gene family AT5G17770 40.613 1.05e-63 201.0
Laca8g02884 . 2 120 NADPH P450 reductases gene family AT1G60660 64.706 2.47e-52 159.0
Laca8g03144 . 38 273 NADPH P450 reductases gene family AT5G17770 39.147 5.67e-50 176.0
Laca8g04476 . 103 192 NADPH P450 reductases gene family AT5G17770 53.261 2.25e-25 98.6
Laca9g02204 . 143 192 NADPH P450 reductases gene family AT5G17770 84.0 2.17e-26 97.1