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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca8g01409 ATGGAATCGAAAAAAGACAGGGGTGAAGTGAGGATTCATGAAAATTTGGATGAACTTAGCACAGATTTGGCTGATTACGTGGCAGAATTATCAGAGGCATCTGTGAAAGAACGTGGCGTTTTCGCCATTGCTTTGTCTGGAGGTTCTCTCATTAGCTTAATGAGGAATCTATGTGGAGCTCCTTATAACAAAACCGTAGATTGGTCCAAATGGTATATATTTTGGGCAGATGAACGTGTGGTTGCCAAAAATCATGTCGATAGTAACTATAAACTTGCAAAAGATCATCTTTTGTCTAAGTTACCTATTGTTCCGAGCCATGTACATTCCATCAATGATTCCCTCACAGCGGAAGAAGCTGCAACCGAATACGAGTTTGTGATCAGACAACTTGTGAGGACACGTGTCATCAACGTGTCTGACGTCAGCGACTGCCCGAAGTTTGACCTAATCCTACTTGGCATGGGCCCGGATGGACATGTGGCGTCTTTGTTCCCTAACCATTCGGTTCTTGAAGAAAAAAACGAGTGGGTGACATTCATCACCACTTCGCCTAAACCTCCGCCCGAAAGAATCACCTTCACCCTGCCCGTTATCAACTCTGCTGCCAATGTGGTGGTGGTGGTGACAGGTGGCGGAAAGGCAGAAGCTGCCAGGCTGGCGATAGATGATGTGGGACCCGAGTGTGAGGTGTTGCCAGCTAGGATGATTGAACCGGTTGTTGGGAAGTTGGTTTGGTTTTTGGATAGCCAAGCTGCTTCAAAGCTGAAGAGCTTTTCTTAA 783 46.1 MESKKDRGEVRIHENLDELSTDLADYVAELSEASVKERGVFAIALSGGSLISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAATEYEFVIRQLVRTRVINVSDVSDCPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVVVVVTGGGKAEAARLAIDDVGPECEVLPARMIEPVVGKLVWFLDSQAASKLKSFS 260
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca8g01409 260 Gene3D - 6 259 - -
Laca8g01409 260 FunFam Probable 6-phosphogluconolactonase 5 257 - -
Laca8g01409 260 Coils Coil 16 36 - -
Laca8g01409 260 CDD 6PGL 17 248 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Laca8g01409 260 PANTHER 6-PHOSPHOGLUCONOLACTONASE 3 257 IPR039104 -
Laca8g01409 260 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 16 246 IPR006148 GO:0005975(InterPro)
Laca8g01409 260 NCBIfam 6-phosphogluconolactonase 12 256 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Laca8g01409 260 SUPERFAMILY NagB-RpiA-CoA transferase-like 10 257 IPR037171 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca8g01409 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3738531 Laca Laca8g00127 Laca-Chr8:3849773 Laca8g01409 Laca-Chr8:48423409