AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi10g01432 ATGAGAGAAGCAAACAACACCAACGAAAACAATCACAGTAGCAACGAATCATCATCACCACCACCACCACCACCACAAGCACTCCTTGAAAGACTTAAAGATTATGGTCAAGAAGATGCTTTTGCTTTCTGGGATCAGCTCTCTTCTGACCAACAAAACTACCTTGTTCAAGAAATTGAGAGTTTAGATCTTCCAAGGATCGATCGAATGATTAGGTGTTCGTTCCAGTCCCATGGGTTACCGGCCGCGGCTATAGAGCCGGTGCCAGAGAGTTCGGTGTCAACTGTGGAAGATAGGAAACTTGAAGATAGAGAAAAATGGTGGAAAATGGGGTTAAAAGCTATTGCAGATGGGAAATTAGCTGTACTACTTTTATCCGGTGGACAGGGGACACGGCTTGGAAGTTCTGCCCCGAAAGGATGTGTTAATATTGGACTTCCATCAGGAAAGTCTCTTTTCCAACTCCAAGCTGAGCGAATTCTATGTCTTCAAAGATTAGCAGCTCAATCCATAACTGAGGGTTCTGGTAATATTGTGCCAATACATTGGTACGTAATGACCAGTCCATTTACTGATAAAAGCACACACAATTTCTTCAAGCATCACAAATATTTTGGTCTTGATGCTGATCAGGTTACTTTCTTTTCACAAGGCACAATACCTTGTGTTTCAAAGGATGGTAGATTTATCATGGAAACTCCATTCCAGGTGGCAAAAGCTCCTGACGGAAATGGAGGAGTTTATTCAGCATTGAAGTATTCAAGACTACTAGAAGATATGTCTTCAAGAGGTGTCAAATATTTGGATTGCTACGGAGTTGATAATGCTTTGGTTCGTGTTGGTGATCCTACTTTCTTGGGCTATTTTATTGATAAGGGCGTAGCATCTGCTGCTAAAGTTGTCCGTAAGGCATACCCTCAAGAGAAAGTTGGTGTATTTGTAAGACGTGGTAAAGGAGGACCTGTAACTGTAGTTGAATATAGTGAGTTGGATCAGTCGCTGGCAAGTGAAATTAACCAGGGAACGGGCCGACTTCGATATTGTTGGAGTAATGTTTGCCTCCACATGTTCACTTTGGACTTCCTGAACCAAGTTGCAAATGGTCTTGAAAAGGACAGCATATATCACCTTGCTGAGAAGAAAATCCCATCAATCCATGGACAAACGGTGGGATACAAGCTAGAACAATTCATATTTGACGCATTTCCATATGCACCTTCAACAGCACTTTTTGAGGTATTACGTGAAGAAGAATTTGCCCCTGTGAAAAATGCCAATGGGTCAAACTTTGACACTCCAGACAGTGCTCGGCTTCTGGTTCTTCGTCTGCATACACGCTGGGTGGTTGCAGCAGGTGGCTTCTTAACACATTCGGTGCCCTTATATTCAACTGGTGTTGAGGTCTCACCACTTGTTTCATACGCTGGAGAAAATCTTGAACCAATTTGCCGCGGTAGAACGTTCCATGCACCTTGTGAAATCACATTCTAG 1491 42.86 MREANNTNENNHSSNESSSPPPPPPQALLERLKDYGQEDAFAFWDQLSSDQQNYLVQEIESLDLPRIDRMIRCSFQSHGLPAAAIEPVPESSVSTVEDRKLEDREKWWKMGLKAIADGKLAVLLLSGGQGTRLGSSAPKGCVNIGLPSGKSLFQLQAERILCLQRLAAQSITEGSGNIVPIHWYVMTSPFTDKSTHNFFKHHKYFGLDADQVTFFSQGTIPCVSKDGRFIMETPFQVAKAPDGNGGVYSALKYSRLLEDMSSRGVKYLDCYGVDNALVRVGDPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKGGPVTVVEYSELDQSLASEINQGTGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGQTVGYKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVVAAGGFLTHSVPLYSTGVEVSPLVSYAGENLEPICRGRTFHAPCEITF 496
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi10g01432 496 MobiDBLite consensus disorder prediction 1 16 - -
Lomi10g01432 496 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 24 492 IPR029044 -
Lomi10g01432 496 MobiDBLite consensus disorder prediction 1 29 - -
Lomi10g01432 496 Pfam UTP--glucose-1-phosphate uridylyltransferase 69 451 IPR002618 GO:0070569(InterPro)
Lomi10g01432 496 SUPERFAMILY Nucleotide-diphospho-sugar transferases 27 494 IPR029044 -
Lomi10g01432 496 FunFam UDP-N-acetylglucosamine diphosphorylase 2 22 492 - -
Lomi10g01432 496 PANTHER UDP- GLUCOSE PYROPHOSPHORYLASE 25 494 IPR039741 GO:0003977(PANTHER)|GO:0006048(PANTHER)
Lomi10g01432 496 CDD UDPGlcNAc-PPase 105 426 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi10g01432 K00972 UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase [EC:2.7.7.23 2.7.7.83]
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Event-related genes

Select Gene_1 Gene_2 Event_name
334479 Lomi10g01432 Lomi8g01298
336239 Lomi8g01298 Lomi10g01432
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr10:12084679 Lomi8g01298 Lomi-Chr8:12635474 wgd