AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi10g01435 ATGAGACCCTTTTGTTTATTAGTATCATTATTTTTGGTGTTACAAGGAGTCAAATGTTCTCAAAAGCAACAAAAGCTTTATGACTTCAAAACTAAACTTCACCAACATTTTTTGATTTCATCTACTTCTGATATTGTTAAGAGTTCGGGTCGGGTGTTTAACCCAATTGGGTATGGAGCAGACCCGGGTGGTGTGCAAGACAGCACGACGGCGATTATGGCTGCGGTGGCTGATGCTGCCTTAAATGGTACCGGGCAGCAATTGCTGCCCGGAGTCAACGATTTGGGTGGCGCAATTATTGACCTTCAAGGTGGCAGCTTCAAGATTTCTAAACCCATTGCTATTCCTCCAAATTCCGGCAATCTTGTGATACAAGGAGGTACATTACGAGCATCAGACACATTTCCATCCGATGGCTATCTCATCGAATTGCGCTCCCCAAGTTCACCACAATTTTCGAGAACCCCAATCAGCGAGTCCAACGACACTTTCTCTGACATGAAAACCAGAAACGAACCAATCTACTACGAAGAGATCACTTTTCGTGACATCCTTTTCGATTCAAGTAACATAGGTGGAGGCCTACTCGTGATTGACTCAGCACGAACTCGAATCAACAACTGTTTGTTCCTACGTTTTGTCACCGAGGGAATACTTGTCGAAAGAGGTCACGAAACGTTTATATCAAGTTCTTTCATGGGAGAGATCCCGACCATTGGTGGAGATGAACACGAGAAGAACTTTATAGGTACAGCAATTGATCTTGCTAGCAACGATAATGCAGTCACTGATGTCGTTATTTTTTCAGCGGCCATAGGGATCGTGTTAAGGGGTCAAGCTAACATGATCACTGGGGTACATTGTTATAACAAGGCAACTTTTTTTGGTGGGGTCGGGATTTTAATAAAAACGGGACAAAATCGTATTGATAATTGTTACATGGATTATAACTCGATTGTTATACAAGACCCTACACAAGTTGATGTTAGTAACGGGTTTTTTCTAGGGGGAGGTAACGTTGTTCTGAGAGCGATTAGTGGTAGGATATCGGGACTTAATATCGTGAACAATATGTTTTCTGGTGACTCGAGGAATGTTGTGGAAATAGATGGGGAGTTTACGAGTATTGATCAAGTTGTGATTGATCAAAATAATGTGAGAGGTGGGATGAGGTTGAAATCGACGACTGGGAAGATGGCGGTTAACGGAAATGGGACGATTTGGGTTGCGGATTTTACGCCCATTTTAGTTTTTCCGAACAGAATAAGTCAAGTTCAATACTCGGTTTATAATGGTGCAGGGAGTATAGAAGGGGTGGGAGGACATGCTGTTACTAATGTTACTGGGAATGTTGTTGTAGTAGAGACTGAAAAACAATTGAATGGAATTGTGTGGTTTTTAGTTGATCAAAATCCATGA 1419 42.0 MRPFCLLVSLFLVLQGVKCSQKQQKLYDFKTKLHQHFLISSTSDIVKSSGRVFNPIGYGADPGGVQDSTTAIMAAVADAALNGTGQQLLPGVNDLGGAIIDLQGGSFKISKPIAIPPNSGNLVIQGGTLRASDTFPSDGYLIELRSPSSPQFSRTPISESNDTFSDMKTRNEPIYYEEITFRDILFDSSNIGGGLLVIDSARTRINNCLFLRFVTEGILVERGHETFISSSFMGEIPTIGGDEHEKNFIGTAIDLASNDNAVTDVVIFSAAIGIVLRGQANMITGVHCYNKATFFGGVGILIKTGQNRIDNCYMDYNSIVIQDPTQVDVSNGFFLGGGNVVLRAISGRISGLNIVNNMFSGDSRNVVEIDGEFTSIDQVVIDQNNVRGGMRLKSTTGKMAVNGNGTIWVADFTPILVFPNRISQVQYSVYNGAGSIEGVGGHAVTNVTGNVVVVETEKQLNGIVWFLVDQNP 472
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi10g01435 472 Gene3D - 52 464 IPR012334 -
Lomi10g01435 472 SUPERFAMILY Pectin lyase-like 1 447 IPR011050 -
Lomi10g01435 472 PANTHER POLYGALACTURONASE QRT3 4 471 IPR039279 GO:0004650(InterPro)|GO:0004650(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi10g01435 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr10:12116088 Lomi8g01304 Lomi-Chr8:12695386 dispersed
Lomi Lomi-Chr10:12116088 Lomi10g01437 Lomi-Chr10:12126186 proximal