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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00076 ATGCAAGCGAAAAAGAAGCAGGATATTGCATGGGATCATTGTTCTCGAGCAGATCCAAAAAACCGGCTTAAGGTGAAATGTAACTATTGTGATAAGGTTATGTTCGGTGGAATCAATAGAATGAAACATCACCTTGCGGGAACGAAAACTCAAGTTAGTGCATGCCCTGAGGTCAATGAAAATATCAAAAGTTTGTTTATAGATTTATTGATGGATTTTGAGGAAAAGAAGTCTAGGGCCAGAGAGGAATGCTTTGATGTTGAAAGTTACAAAGAAAAGGAGAAGTTAGCCGATTCTTTTGTCAAAAAGAGAACACCAAAAACTATGAACCAATCTTTAAACAATGAAGAGCCCGTAGTTCGTGCTTTATGTCGACTTTTATATGGTGAAGTTTTACCATTTAACTTGGTAAAATCTCCTTTATGGAAAGAAGCTTCACGACTTGTGAGGAAATATGGTAAAGGATTGAAAGATCCTTCTTATCATGAAACAAGAGTAACATACCTAAATAAGGAGTGGAAAAGGAAAAAGGCAATGGAGATCAAGAAAAAGTTATTGCAGAAAAAGGCTTCTAATCCTAAAAAGAAGGTGAGTTTTGATCTGCCACACAATGAAATAGTAAGCTATGACCCAAAGTCAGCTGCTTTGGCTCAACCTACTGATTCACAAGCCAAGTCTGCTGCTATAGAGCGAGCCAACAAGGTTCAAGCAAGCCTTCCCTCTGAGTTTCCCAGTTTTGTTAAGCCTATGCTTCCATCACATGTTACAGGTGGCGTTTGGCTGGAGTTTCCCAAGAAATTTTGTGATGCAAATCTTCCAAAGAATGATGAGACACTTGTGTTGGTGGACGAAGATGATCAAGAATTTAGCACAACGTATCTAGTTGACAAGACTGGATTAAGTGGTGGCTGGAGAGGATTTTCAACTGCTCACAACTTGATTGAGGGGGATACTTTAGTTTTTCAATTAATTGAGCATTGGAAATTTAAGGTCTACACTGTAAGGGTACATGATCAAAAAGAAATTGATGGGGTTCTTGGCCTTCTCAACTTAGTTCCTAGTAACATGAATGTTTACCAACGCCAAATCGAGAAGGGCTCGAGGAATCTTCAGAGAGCTGAAGATATGGAAAGAGATTCACAGAAAGACACCACTCAAGAGAAACGTTTAGTATCATTTGATCAAACAGAAGACAGCAGTAAGTATGCAGATTCAGCAGTTTCTGAAAAACTAAGAGTCACACGATCTGCTATGGAGCTCAAGAATATTAAGGATATTGACGATTTCAGTATCTTTGTGGATGGTTTGGTCATAGATTCTGAAATACCAAAAGATTTTCAGATCAAATACTATGATCTATGTCATAGCCAAAAGATGTATCTTCATGATAACCTACTCAAGGGCCTCAATGTCAAACTAGTTGTTGGAATAATTCTTGAAACTGTTACAATTGCTGATGCCATTAGAGGCTGTAAAGTCACCATTACTCTTGAAGATATTGAAACATGGGACAAAATTTTAAAGGCATTTGAGGAGGTAGGTTTGAAAGTCGGATTTTTGAGAGCCCGGATTGGGAAGCTCAAAGGGTTATTGTTTGAATCAAACGAGATCTTGGAAGCAAAGAGGAAAGAACGAGTAAAAGCCGATGACGAAATGAGAGATATCAACAAAAAGCTTTGTGGGGTTTGGGAGGTAATCAAGAATCTTGATGATGAAATTGAAACTCTAGAGTTGAAAGGCCAAAACCTTGAACCGGTTTTTCATAAAGAGGCTAATGCACCATGGTGA 1788 38.31 MQAKKKQDIAWDHCSRADPKNRLKVKCNYCDKVMFGGINRMKHHLAGTKTQVSACPEVNENIKSLFIDLLMDFEEKKSRAREECFDVESYKEKEKLADSFVKKRTPKTMNQSLNNEEPVVRALCRLLYGEVLPFNLVKSPLWKEASRLVRKYGKGLKDPSYHETRVTYLNKEWKRKKAMEIKKKLLQKKASNPKKKVSFDLPHNEIVSYDPKSAALAQPTDSQAKSAAIERANKVQASLPSEFPSFVKPMLPSHVTGGVWLEFPKKFCDANLPKNDETLVLVDEDDQEFSTTYLVDKTGLSGGWRGFSTAHNLIEGDTLVFQLIEHWKFKVYTVRVHDQKEIDGVLGLLNLVPSNMNVYQRQIEKGSRNLQRAEDMERDSQKDTTQEKRLVSFDQTEDSSKYADSAVSEKLRVTRSAMELKNIKDIDDFSIFVDGLVIDSEIPKDFQIKYYDLCHSQKMYLHDNLLKGLNVKLVVGIILETVTIADAIRGCKVTITLEDIETWDKILKAFEEVGLKVGFLRARIGKLKGLLFESNEILEAKRKERVKADDEMRDINKKLCGVWEVIKNLDDEIETLELKGQNLEPVFHKEANAPW 595
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00076 595 MobiDBLite consensus disorder prediction 367 387 - -
Lomi1g00076 595 Pfam BED zinc finger 10 55 IPR003656 GO:0003677(InterPro)
Lomi1g00076 595 Coils Coil 356 376 - -
Lomi1g00076 595 Gene3D - 221 339 IPR015300 -
Lomi1g00076 595 ProSiteProfiles Zinc finger BED-type profile. 5 62 IPR003656 GO:0003677(InterPro)
Lomi1g00076 595 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 91 340 IPR044837 -
Lomi1g00076 595 ProSiteProfiles B3 DNA-binding domain profile. 246 337 IPR003340 GO:0003677(InterPro)
Lomi1g00076 595 SUPERFAMILY DNA-binding pseudobarrel domain 239 335 IPR015300 -
Lomi1g00076 595 Coils Coil 538 558 - -
Lomi1g00076 595 SMART B3-2 246 337 IPR003340 GO:0003677(InterPro)
Lomi1g00076 595 Pfam B3 DNA binding domain 246 336 IPR003340 GO:0003677(InterPro)
Lomi1g00076 595 CDD B3-DNA 244 332 IPR003340 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00076 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
121119 Lomi1g00076 Lomi3g00888
323958 Lomi2g04586 Lomi1g00076
333519 Lomi1g00076 Lomi2g04586
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:761130 Lomi2g04585 Lomi-Chr2:50783944 dispersed
Lomi Lomi-Chr1:748110 Lomi1g00076 Lomi-Chr1:761130 tandem
Lomi Lomi-Chr1:761130 Lomi1g00077 Lomi-Chr1:766506 tandem
Lomi Lomi-Chr13:26359301 Lomi1g00076 Lomi-Chr1:761130 transposed
Lomi Lomi-Chr14:1305188 Lomi1g00076 Lomi-Chr1:761130 transposed
Lomi Lomi-Chr7:15407777 Lomi1g00076 Lomi-Chr1:761130 transposed
Lomi Lomi-Chr8:31105243 Lomi1g00076 Lomi-Chr1:761130 transposed
Lomi Lomi-Chr1:761130 Lomi11g00340 Lomi-Chr11:4592778 wgd
Lomi Lomi-Chr1:761130 Lomi12g00764 Lomi-Chr12:8832263 wgd
Lomi Lomi-Chr1:761130 Lomi3g00888 Lomi-Chr3:7235425 wgd
Lomi Lomi-Chr1:761130 Lomi4g02488 Lomi-Chr4:32642881 wgd
Lomi Lomi-Chr1:761130 Lomi5g00461 Lomi-Chr5:5485039 wgd
Lomi Lomi-Chr1:761130 Lomi6g00840 Lomi-Chr6:9526908 wgd
Lomi Lomi-Chr1:761130 Lomi7g00847 Lomi-Chr7:9728787 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00075 LST 69 199 B3 DNA Binding Superfamily AT5G42700 42.424 3.09e-25 99.4
Lomi1g00076 ACH,LST 108 227 B3 DNA Binding Superfamily AT3G19184 53.333 5.46e-39 142.0
Lomi1g00077 ACH,LST 104 230 B3 DNA Binding Superfamily AT3G19184 53.543 5.07e-41 145.0
Lomi1g00624 . 3 664 B3 DNA Binding Superfamily AT1G59750 66.568 0.0 876.0
Lomi1g00625 . 2 359 B3 DNA Binding Superfamily AT1G59750 53.631 2.34e-136 402.0
Lomi1g02275 . 1 797 B3 DNA Binding Superfamily AT5G37020 57.706 0.0 858.0
Lomi1g02376 . 1 567 B3 DNA Binding Superfamily AT2G33860 50.423 0.0 525.0
Lomi1g02452 LST 15 660 B3 DNA Binding Superfamily AT4G21550 34.94 2.03e-113 358.0
Lomi1g02801 . 62 772 B3 DNA Binding Superfamily AT5G60450 54.521 0.0 715.0
Lomi1g02822 . 2 693 B3 DNA Binding Superfamily AT2G28350 54.812 0.0 677.0
Lomi1g03113 . 12 667 B3 DNA Binding Superfamily AT4G30080 56.598 0.0 686.0
Lomi1g04140 . 5 891 B3 DNA Binding Superfamily AT1G19850 57.837 0.0 965.0
Lomi2g00318 . 5 895 B3 DNA Binding Superfamily AT1G19850 58.499 0.0 959.0
Lomi2g01300 . 12 667 B3 DNA Binding Superfamily AT4G30080 55.572 0.0 680.0
Lomi2g01542 . 2 693 B3 DNA Binding Superfamily AT2G28350 55.462 0.0 672.0
Lomi2g01559 . 62 772 B3 DNA Binding Superfamily AT5G60450 55.116 0.0 736.0
Lomi2g01905 LST 14 660 B3 DNA Binding Superfamily AT4G21550 35.013 1.70e-111 353.0
Lomi2g01965 . 1 564 B3 DNA Binding Superfamily AT2G33860 48.822 4.12e-173 504.0
Lomi2g02049 . 1 797 B3 DNA Binding Superfamily AT5G37020 57.59 0.0 858.0
Lomi2g03975 . 3 664 B3 DNA Binding Superfamily AT1G59750 65.782 0.0 872.0
Lomi2g04585 ACH,LST 104 230 B3 DNA Binding Superfamily AT3G19184 53.543 1.86e-40 144.0
Lomi2g04586 LST 92 194 B3 DNA Binding Superfamily AT5G42700 53.398 1.78e-33 118.0
Lomi2g04587 LST 69 199 B3 DNA Binding Superfamily AT5G42700 41.667 3.20e-25 99.4
Lomi3g00409 . 1 489 B3 DNA Binding Superfamily AT1G19220 67.6 0.0 652.0
Lomi3g00888 ACH,LST 5 227 B3 DNA Binding Superfamily AT3G19184 59.735 8.14e-82 244.0
Lomi3g02936 ACH,LST 3 672 B3 DNA Binding Superfamily AT4G32010 48.464 0.0 645.0
Lomi3g02945 LST 4 222 B3 DNA Binding Superfamily AT5G58280 50.655 2.13e-67 209.0
Lomi3g03012 LST 431 707 B3 DNA Binding Superfamily AT3G24650 57.143 8.54e-92 301.0
Lomi3g03211 ACH,LST 1 751 B3 DNA Binding Superfamily AT4G32010 45.818 0.0 635.0
Lomi4g00127 ACH,LST 1 751 B3 DNA Binding Superfamily AT4G32010 48.504 0.0 699.0
Lomi4g00473 LST 431 712 B3 DNA Binding Superfamily AT3G24650 56.314 1.29e-91 300.0
Lomi4g00576 LST 100 222 B3 DNA Binding Superfamily AT5G58280 59.35 6.58e-48 155.0
Lomi4g00592 ACH,LST 3 670 B3 DNA Binding Superfamily AT4G32010 48.876 0.0 647.0
Lomi4g01081 . 84 182 B3 DNA Binding Superfamily AT1G59750 52.525 6.22e-28 105.0
Lomi4g02488 ACH,LST 5 227 B3 DNA Binding Superfamily AT3G19184 60.619 6.78e-83 246.0
Lomi4g02896 . 1 432 B3 DNA Binding Superfamily AT1G19220 73.128 0.0 655.0
Lomi5g00223 . 1 843 B3 DNA Binding Superfamily AT5G62000 59.606 0.0 974.0
Lomi5g00461 LST 1 240 B3 DNA Binding Superfamily AT3G19184 54.435 3.11e-76 230.0
Lomi5g01559 . 1 616 B3 DNA Binding Superfamily AT4G23980 59.193 0.0 701.0
Lomi5g02642 . 1 453 B3 DNA Binding Superfamily AT1G19220 72.163 0.0 663.0
Lomi5g02982 . 1 481 B3 DNA Binding Superfamily AT1G19220 75.615 0.0 736.0
Lomi6g00279 . 1 850 B3 DNA Binding Superfamily AT5G62000 61.156 0.0 989.0
Lomi6g00324 LST 264 396 B3 DNA Binding Superfamily AT2G30470 46.269 1.44e-34 130.0
Lomi6g00827 . 4 108 B3 DNA Binding Superfamily AT5G66980 38.679 6.12e-19 79.7
Lomi6g00840 ACH 112 222 B3 DNA Binding Superfamily AT3G19184 49.55 3.30e-29 114.0
Lomi6g01118 . 1 793 B3 DNA Binding Superfamily AT5G37020 66.461 0.0 984.0
Lomi6g01929 ACH,LST 45 313 B3 DNA Binding Superfamily AT3G26790 41.636 2.94e-56 183.0
Lomi6g02509 . 3 616 B3 DNA Binding Superfamily AT4G23980 59.571 0.0 689.0
Lomi7g00282 LST 246 387 B3 DNA Binding Superfamily AT4G32010 44.056 9.04e-36 134.0
Lomi7g00847 ACH 112 222 B3 DNA Binding Superfamily AT3G19184 46.847 9.94e-26 104.0
Lomi7g00997 . 1 802 B3 DNA Binding Superfamily AT5G37020 65.116 0.0 983.0
Lomi7g01373 . 6 225 B3 DNA Binding Superfamily AT4G00260 27.434 5.16e-14 70.9
Lomi7g01698 ACH,LST 45 313 B3 DNA Binding Superfamily AT3G26790 43.123 8.15e-60 192.0
Lomi7g02362 . 3 616 B3 DNA Binding Superfamily AT4G23980 60.215 0.0 694.0
Lomi8g00487 . 1 670 B3 DNA Binding Superfamily AT4G30080 57.205 0.0 709.0
Lomi8g00789 . 62 772 B3 DNA Binding Superfamily AT5G60450 55.246 0.0 743.0
Lomi8g00800 . 2 693 B3 DNA Binding Superfamily AT2G28350 51.676 0.0 655.0
Lomi8g00857 ACH 22 204 B3 DNA Binding Superfamily AT3G26790 37.681 1.43e-38 135.0
Lomi8g02508 LST 18 296 B3 DNA Binding Superfamily AT5G18000 20.984 2.23e-11 62.4
Lomi9g00376 . 14 124 B3 DNA Binding Superfamily AT3G18960 29.73 9.63e-12 62.8
Lomi9g01382 . 9 130 B3 DNA Binding Superfamily AT5G66980 39.837 8.69e-23 93.2
Lomi9g01420 . 81 211 B3 DNA Binding Superfamily AT5G42700 45.038 5.51e-34 125.0
Lomi9g01422 ACH 115 277 B3 DNA Binding Superfamily AT3G19184 39.429 1.20e-34 130.0
Lomi9g01735 . 1 592 B3 DNA Binding Superfamily AT4G30080 55.357 0.0 603.0
Lomi9g02242 . 32 463 B3 DNA Binding Superfamily AT1G19850 72.644 0.0 644.0
Lomi10g00373 . 1 670 B3 DNA Binding Superfamily AT4G30080 56.706 0.0 705.0
Lomi10g00692 . 62 772 B3 DNA Binding Superfamily AT5G60450 55.172 0.0 739.0
Lomi10g00709 . 2 693 B3 DNA Binding Superfamily AT2G28350 50.831 0.0 653.0
Lomi10g00982 ACH 23 129 B3 DNA Binding Superfamily AT4G01580 42.991 2.99e-24 95.1
Lomi10g01248 . 1 794 B3 DNA Binding Superfamily AT5G37020 66.226 0.0 1016.0
Lomi10g01491 . 155 289 B3 DNA Binding Superfamily AT1G05930 31.915 1.11e-15 73.9
Lomi10g02325 . 1 566 B3 DNA Binding Superfamily AT2G33860 46.166 9.41e-158 465.0
Lomi11g00185 . 8 843 B3 DNA Binding Superfamily AT5G62000 59.668 0.0 962.0
Lomi11g00340 LST 1 235 B3 DNA Binding Superfamily AT3G19184 54.286 5.81e-75 226.0
Lomi11g02414 . 1 453 B3 DNA Binding Superfamily AT1G19220 71.734 0.0 659.0
Lomi12g00090 . 32 424 B3 DNA Binding Superfamily AT1G19850 76.845 0.0 637.0
Lomi12g00562 . 1 586 B3 DNA Binding Superfamily AT4G30080 54.516 0.0 582.0
Lomi12g00764 ACH 92 201 B3 DNA Binding Superfamily AT5G42700 47.273 1.90e-31 119.0
Lomi13g00444 ACH 211 332 B3 DNA Binding Superfamily AT4G32010 59.016 2.98e-39 138.0
Lomi14g00490 ACH 611 780 B3 DNA Binding Superfamily AT4G32010 42.935 6.70e-35 130.0
Lomi14g00491 ACH 38 780 B3 DNA Binding Superfamily AT4G32010 47.765 0.0 658.0
Lomi14g00850 ACH 9 738 B3 DNA Binding Superfamily AT2G30470 46.354 0.0 607.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Lomi B3 5e-14 CL0405 TF B3