AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00078 ATGTTGACTAGTACAGCAGGAGGTACCTTTTACTGGTTTCGAAATGAAATTGAATCAAAATTCGAAGGAATCGTTGTGATTTTCGCTTGGGGTTCGGTTCAAGATTCTCAATTGAAGAATTATGTAACTCTATATTCGTCAATTGGGTGGAATTCCCTCGTTGTTCAATCCGATTTCCTCAATCCATTTTTTCCTGAGAGAGCTACGTCACTTGCGTTTTCCGTCCTCAATGAGCTTTTAGATGAGTTGAGGTCTAAACCATGCCCTTTAGTCCTTGCATCCTTTTCTGGTGGCGCACAGGCTTGTATGTATAAGGTTTTTCAGATCATTGAAGGAACATGTGAAGCACATCTTAATCTGGATGATAGTCGATTAATCATGACGTGCATCTCTGGTCAAATGTATGACTCTGGTCCTGTTAATGTAACTGGTGATCTGGGTGCTCGATTTGCCCTACACTCATCCATTCGAAATGTGCCTGGTTCATCAAAATTGGTGTCGATGGTTGCAAAAGGTGTCACATCTGGTCTGGATGCCTTGTTCCTTACTAAATTTGGGTCCCAACGGTCTGAATATTGGCAAACGCTTTACTCTTCTGTTGGTTTGGAGGCCCCATTTCTGATATTTTGTTCCGAAAATGATGATCTTGCGCCGTATCCAGTTATATGCTCATTTGCTAAACAAGTAAGAGGATTAGGAGGACATGTTCGACTTATCGGATGGAAAGACTCACCTCATGTAGGTCACTACAAACATGACCCAATCCAATACAGAGCAGCTGTAACCGAGTTTCTTGAGCAGTCTGTTTCAATATTTAACCAAAAACTACAAACACTTGCTGAAAGAAGTGGGATGGAAGGTATGCATGACAAAATTTGTGAATTAATCTGCGATCTTCAAAATGCAGCAGTTGACTCGAACCAAAGTCTAAGAAGAGTAGCCATAGGACCAAACGACCACTTTTTCTTGCCAAGTTCAGCCGAGTATCAAAATGATAAAGAATCTGGATCGTTACAGGATGAACAAAAAGAAAGAAGAGCTGTCCATTTATCAAGTCCTCCAAGTCTAAGTCCTCACAGTGTTCTTGGTCAAGTTCTTTTCGATGTTTGTGTGCCCAAAAACATCGAAGGTTGGGATATAAAGTTTGAAAACAGACAGCTGTTTTCATCTCCTGCTTGTAAACGGCCATCTTTAAATGCATTAAAACGTATGAGGCGATCAAGATTATAA 1230 40.65 MLTSTAGGTFYWFRNEIESKFEGIVVIFAWGSVQDSQLKNYVTLYSSIGWNSLVVQSDFLNPFFPERATSLAFSVLNELLDELRSKPCPLVLASFSGGAQACMYKVFQIIEGTCEAHLNLDDSRLIMTCISGQMYDSGPVNVTGDLGARFALHSSIRNVPGSSKLVSMVAKGVTSGLDALFLTKFGSQRSEYWQTLYSSVGLEAPFLIFCSENDDLAPYPVICSFAKQVRGLGGHVRLIGWKDSPHVGHYKHDPIQYRAAVTEFLEQSVSIFNQKLQTLAERSGMEGMHDKICELICDLQNAAVDSNQSLRRVAIGPNDHFFLPSSAEYQNDKESGSLQDEQKERRAVHLSSPPSLSPHSVLGQVLFDVCVPKNIEGWDIKFENRQLFSSPACKRPSLNALKRMRRSRL 409
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00078 409 PANTHER UNCHARACTERIZED 6 272 IPR008547 -
Lomi1g00078 409 MobiDBLite consensus disorder prediction 334 348 - -
Lomi1g00078 409 Pfam Eukaryotic protein of unknown function (DUF829) 130 378 IPR008547 -
Lomi1g00078 409 MobiDBLite consensus disorder prediction 324 355 - -
Lomi1g00078 409 SUPERFAMILY alpha-beta-Hydrolases 48 267 IPR029058 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00078 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
323960 Lomi2g04583 Lomi1g00078
333517 Lomi1g00078 Lomi2g04583
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:771766 Lomi6g00483 Lomi-Chr6:5387372 dispersed
Lomi Lomi-Chr1:771766 Lomi11g00341 Lomi-Chr11:4598638 wgd
Lomi Lomi-Chr1:771766 Lomi2g04583 Lomi-Chr2:50772708 wgd
Lomi Lomi-Chr1:771766 Lomi5g00463 Lomi-Chr5:5501391 wgd