Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi1g00078 | ATGTTGACTAGTACAGCAGGAGGTACCTTTTACTGGTTTCGAAATGAAATTGAATCAAAATTCGAAGGAATCGTTGTGATTTTCGCTTGGGGTTCGGTTCAAGATTCTCAATTGAAGAATTATGTAACTCTATATTCGTCAATTGGGTGGAATTCCCTCGTTGTTCAATCCGATTTCCTCAATCCATTTTTTCCTGAGAGAGCTACGTCACTTGCGTTTTCCGTCCTCAATGAGCTTTTAGATGAGTTGAGGTCTAAACCATGCCCTTTAGTCCTTGCATCCTTTTCTGGTGGCGCACAGGCTTGTATGTATAAGGTTTTTCAGATCATTGAAGGAACATGTGAAGCACATCTTAATCTGGATGATAGTCGATTAATCATGACGTGCATCTCTGGTCAAATGTATGACTCTGGTCCTGTTAATGTAACTGGTGATCTGGGTGCTCGATTTGCCCTACACTCATCCATTCGAAATGTGCCTGGTTCATCAAAATTGGTGTCGATGGTTGCAAAAGGTGTCACATCTGGTCTGGATGCCTTGTTCCTTACTAAATTTGGGTCCCAACGGTCTGAATATTGGCAAACGCTTTACTCTTCTGTTGGTTTGGAGGCCCCATTTCTGATATTTTGTTCCGAAAATGATGATCTTGCGCCGTATCCAGTTATATGCTCATTTGCTAAACAAGTAAGAGGATTAGGAGGACATGTTCGACTTATCGGATGGAAAGACTCACCTCATGTAGGTCACTACAAACATGACCCAATCCAATACAGAGCAGCTGTAACCGAGTTTCTTGAGCAGTCTGTTTCAATATTTAACCAAAAACTACAAACACTTGCTGAAAGAAGTGGGATGGAAGGTATGCATGACAAAATTTGTGAATTAATCTGCGATCTTCAAAATGCAGCAGTTGACTCGAACCAAAGTCTAAGAAGAGTAGCCATAGGACCAAACGACCACTTTTTCTTGCCAAGTTCAGCCGAGTATCAAAATGATAAAGAATCTGGATCGTTACAGGATGAACAAAAAGAAAGAAGAGCTGTCCATTTATCAAGTCCTCCAAGTCTAAGTCCTCACAGTGTTCTTGGTCAAGTTCTTTTCGATGTTTGTGTGCCCAAAAACATCGAAGGTTGGGATATAAAGTTTGAAAACAGACAGCTGTTTTCATCTCCTGCTTGTAAACGGCCATCTTTAAATGCATTAAAACGTATGAGGCGATCAAGATTATAA | 1230 | 40.65 | MLTSTAGGTFYWFRNEIESKFEGIVVIFAWGSVQDSQLKNYVTLYSSIGWNSLVVQSDFLNPFFPERATSLAFSVLNELLDELRSKPCPLVLASFSGGAQACMYKVFQIIEGTCEAHLNLDDSRLIMTCISGQMYDSGPVNVTGDLGARFALHSSIRNVPGSSKLVSMVAKGVTSGLDALFLTKFGSQRSEYWQTLYSSVGLEAPFLIFCSENDDLAPYPVICSFAKQVRGLGGHVRLIGWKDSPHVGHYKHDPIQYRAAVTEFLEQSVSIFNQKLQTLAERSGMEGMHDKICELICDLQNAAVDSNQSLRRVAIGPNDHFFLPSSAEYQNDKESGSLQDEQKERRAVHLSSPPSLSPHSVLGQVLFDVCVPKNIEGWDIKFENRQLFSSPACKRPSLNALKRMRRSRL | 409 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi1g00078 | 409 | PANTHER | UNCHARACTERIZED | 6 | 272 | IPR008547 | - | |
| Lomi1g00078 | 409 | MobiDBLite | consensus disorder prediction | 334 | 348 | - | - | |
| Lomi1g00078 | 409 | Pfam | Eukaryotic protein of unknown function (DUF829) | 130 | 378 | IPR008547 | - | |
| Lomi1g00078 | 409 | MobiDBLite | consensus disorder prediction | 324 | 355 | - | - | |
| Lomi1g00078 | 409 | SUPERFAMILY | alpha-beta-Hydrolases | 48 | 267 | IPR029058 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi1g00078 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 323960 | Lomi2g04583 | Lomi1g00078 | |
| 333517 | Lomi1g00078 | Lomi2g04583 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:771766 | Lomi6g00483 | Lomi-Chr6:5387372 | dispersed | |
| Lomi | Lomi-Chr1:771766 | Lomi11g00341 | Lomi-Chr11:4598638 | wgd | |
| Lomi | Lomi-Chr1:771766 | Lomi2g04583 | Lomi-Chr2:50772708 | wgd | |
| Lomi | Lomi-Chr1:771766 | Lomi5g00463 | Lomi-Chr5:5501391 | wgd |