AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00094 ATGGGGAGCTTAAATATGTCTCCTGAACTAAGTTTGGATGCTAAACCAATTTTCATCCCGAAAACAATCACTCAGTTTCTTGAACAAGTATCGAAAATCGATGGTGTAACAGAGAAGGTACTACAAGTTGATATCTATGTTAACAGATTAGAATCTGAAAAGGGAAAAATGGAAGCTTTTGAACATGAAGTCCCACTATCCATGCTCCTTATCAATGATGCAATTGTTGCTTTGAAAGAGGAATCAATGGTGTTAAAGAAATCATTAAGTGTCGAACTGGTACTTGAAGAATTTATACCACTCAAGAACAGTTGTGATGATCATAATGATGATGTAAAAGTTGAAGTCGTTACGAATGAGAGCGATAATGGTGATAAGAAGAATTGGTTGAGCTCTACACATCTTTGGAATGCTAATGAGAATCTTAATCAGAAATCAAATGTTGTACCGATTAAAAAGAGAGCTGAAGAAGAAGATGTAAGGAGAGCAATTTTTAGCCCTGAGATCAATGGTTATAGTCAATTGATTCCATTTTCTATGCCAAATTTTCAGAATATACAAATTGGCAGCACTGTTCATGCACCATTACGCCAACAGACATCTAGGAAACAAAGGAGATGTTGGTCCACCGAGTTACATAGACGATTTGTTAATGCCCTACAACAACTTGGAGGTTCACAAGTAGCCACACCTAAGCAGATTCGAGAGCTTATGCAAGTAGATGGTCTCACCAATGATGAAGTCAAGAGCCATTTACAAAAATACAGGCTTCACACACGAAGACATCCATCTTCAAACACAACTCAATCTAATGGTGTTGTGGTAGGACGATTGTGGATATCTAAATGTAGTGATTCTCAATCCAATTCTCCTGATGGGCCCCTCCCGACTGGTGGCAGCAGCATGGATGATGAAGAAGATGAGAAATCTGAGAACAATTGGTATCATTGCGTTAGTTAA 960 38.12 MGSLNMSPELSLDAKPIFIPKTITQFLEQVSKIDGVTEKVLQVDIYVNRLESEKGKMEAFEHEVPLSMLLINDAIVALKEESMVLKKSLSVELVLEEFIPLKNSCDDHNDDVKVEVVTNESDNGDKKNWLSSTHLWNANENLNQKSNVVPIKKRAEEEDVRRAIFSPEINGYSQLIPFSMPNFQNIQIGSTVHAPLRQQTSRKQRRCWSTELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRHPSSNTTQSNGVVVGRLWISKCSDSQSNSPDGPLPTGGSSMDDEEDEKSENNWYHCVS 319
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00094 319 SUPERFAMILY Homeodomain-like 200 261 IPR009057 -
Lomi1g00094 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 260 IPR017930 -
Lomi1g00094 319 FunFam Myb family transcription factor 202 260 - -
Lomi1g00094 319 MobiDBLite consensus disorder prediction 284 319 - -
Lomi1g00094 319 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 258 IPR006447 GO:0003677(InterPro)
Lomi1g00094 319 Gene3D - 202 260 - -
Lomi1g00094 319 Pfam Myb-like DNA-binding domain 205 256 IPR001005 -
Lomi1g00094 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 312 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00094 K28176 GARP family transcription factor, NIGT1 subfamily
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
118804 Lomi11g02041 Lomi1g00094
121129 Lomi1g00094 Lomi3g00877
121130 Lomi1g00094 Lomi4g02501
121131 Lomi1g00094 Lomi5g02257
323966 Lomi2g04569 Lomi1g00094
333511 Lomi1g00094 Lomi2g04569
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:887455 Lomi3g02014 Lomi-Chr3:17465556 dispersed
Lomi Lomi-Chr1:887455 Lomi11g02041 Lomi-Chr11:28979636 wgd
Lomi Lomi-Chr1:887455 Lomi2g04569 Lomi-Chr2:50649253 wgd
Lomi Lomi-Chr1:887455 Lomi3g00877 Lomi-Chr3:7140193 wgd
Lomi Lomi-Chr1:887455 Lomi4g02501 Lomi-Chr4:32742105 wgd
Lomi Lomi-Chr1:887455 Lomi5g02257 Lomi-Chr5:32926119 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00094 ACH,LST 12 310 G2-like Transcription Factor family AT4G37180 38.125 8.76e-52 172.0
Lomi1g01012 LST 73 172 G2-like Transcription Factor family AT2G40260 67.0 6.27e-38 138.0
Lomi1g02523 . 46 148 G2-like Transcription Factor family AT2G40260 49.515 1.61e-28 107.0
Lomi1g02574 . 5 270 G2-like Transcription Factor family AT2G01060 67.79 1.21e-109 316.0
Lomi1g02640 ACH,LST 1 275 G2-like Transcription Factor family AT4G13640 67.014 6.11e-127 361.0
Lomi1g03350 ACH 198 387 G2-like Transcription Factor family AT1G32240 58.0 9.12e-62 200.0
Lomi1g04319 LST 36 417 G2-like Transcription Factor family AT2G20570 50.976 9.45e-104 312.0
Lomi2g00186 LST 36 417 G2-like Transcription Factor family AT2G20570 49.272 1.44e-98 299.0
Lomi2g01720 ACH,LST 1 285 G2-like Transcription Factor family AT4G13640 66.107 3.31e-127 362.0
Lomi2g01785 . 9 270 G2-like Transcription Factor family AT2G01060 68.939 2.81e-110 318.0
Lomi2g02991 . 1 266 G2-like Transcription Factor family AT5G05090 53.633 3.21e-73 223.0
Lomi2g03458 LST 47 172 G2-like Transcription Factor family AT2G40260 62.698 7.56e-40 144.0
Lomi2g04569 ACH,LST 4 314 G2-like Transcription Factor family AT2G03500 35.65 3.40e-51 173.0
Lomi3g00877 ACH,LST 4 323 G2-like Transcription Factor family AT2G03500 37.429 3.46e-56 189.0
Lomi3g02014 ACH,LST 1 311 G2-like Transcription Factor family AT1G25550 39.766 9.92e-66 209.0
Lomi3g02112 ACH,LST 1 79 G2-like Transcription Factor family AT1G14600 70.886 1.42e-32 118.0
Lomi3g02508 LST 1 223 G2-like Transcription Factor family AT3G46640 59.751 2.34e-81 248.0
Lomi3g03029 ACH,LST 56 355 G2-like Transcription Factor family AT4G28610 52.174 1.75e-90 276.0
Lomi3g03261 ACH,LST 15 144 G2-like Transcription Factor family AT2G01060 56.923 2.50e-52 170.0
Lomi4g00023 LST 13 144 G2-like Transcription Factor family AT2G01060 55.303 1.63e-51 168.0
Lomi4g00435 ACH,LST 56 355 G2-like Transcription Factor family AT4G28610 52.5 1.23e-93 284.0
Lomi4g00801 ACH,LST 1 223 G2-like Transcription Factor family AT3G46640 59.916 9.85e-84 254.0
Lomi4g01426 ACH,LST 1 79 G2-like Transcription Factor family AT1G14600 70.886 7.08e-32 116.0
Lomi4g01503 ACH,LST 2 301 G2-like Transcription Factor family AT1G25550 41.214 1.02e-62 200.0
Lomi4g02501 ACH,LST 4 323 G2-like Transcription Factor family AT2G03500 36.986 3.01e-55 187.0
Lomi5g01591 ACH,LST 174 388 G2-like Transcription Factor family AT1G32240 52.655 5.54e-58 190.0
Lomi5g01853 LST 14 163 G2-like Transcription Factor family AT3G12730 71.333 2.40e-71 223.0
Lomi5g02257 ACH,LST 1 301 G2-like Transcription Factor family AT2G03500 39.873 1.38e-56 189.0
Lomi5g02880 LST 1 432 G2-like Transcription Factor family AT2G03500 48.66 4.58e-125 369.0
Lomi6g01143 LST 1 400 G2-like Transcription Factor family AT5G16560 43.172 3.51e-74 236.0
Lomi6g02628 ACH,LST 1 386 G2-like Transcription Factor family AT1G32240 48.522 1.23e-86 265.0
Lomi6g02643 LST 1 245 G2-like Transcription Factor family AT5G45580 54.4 9.00e-76 229.0
Lomi7g00976 LST 1 400 G2-like Transcription Factor family AT5G16560 43.902 1.21e-74 237.0
Lomi7g02221 ACH,LST 1 245 G2-like Transcription Factor family AT5G45580 52.308 2.72e-75 228.0
Lomi7g02239 ACH,LST 175 386 G2-like Transcription Factor family AT1G32240 60.633 1.02e-69 222.0
Lomi8g00257 LST 45 344 G2-like Transcription Factor family AT2G40260 40.328 2.42e-48 167.0
Lomi8g01438 ACH,LST 10 311 G2-like Transcription Factor family AT1G25550 53.892 8.24e-102 303.0
Lomi8g01463 ACH,LST 21 82 G2-like Transcription Factor family AT2G02060 82.258 3.14e-31 115.0
Lomi8g01853 LST 42 110 G2-like Transcription Factor family AT2G42660 73.913 7.74e-31 116.0
Lomi8g02564 LST 25 223 G2-like Transcription Factor family AT1G69580 57.82 5.01e-74 229.0
Lomi9g00581 LST 12 259 G2-like Transcription Factor family AT5G42630 40.705 2.50e-53 174.0
Lomi9g01848 LST 44 185 G2-like Transcription Factor family AT2G40260 60.14 2.53e-47 163.0
Lomi9g02196 LST 71 392 G2-like Transcription Factor family AT3G04450 45.509 2.30e-76 241.0
Lomi10g00221 ACH,LST 45 344 G2-like Transcription Factor family AT2G40260 38.961 4.95e-45 158.0
Lomi10g01489 ACH 18 400 G2-like Transcription Factor family AT5G18240 48.837 5.16e-105 311.0
Lomi10g01630 ACH,LST 10 326 G2-like Transcription Factor family AT1G25550 52.113 4.08e-102 304.0
Lomi10g01680 ACH,LST 21 82 G2-like Transcription Factor family AT2G02060 82.258 2.04e-31 115.0
Lomi10g02388 LST 5 175 G2-like Transcription Factor family AT2G42660 45.604 1.21e-31 119.0
Lomi10g02924 LST 22 215 G2-like Transcription Factor family AT1G69580 56.796 2.44e-73 227.0
Lomi11g01536 ACH,LST 174 359 G2-like Transcription Factor family AT1G32240 54.68 8.51e-55 181.0
Lomi11g01793 LST 14 189 G2-like Transcription Factor family AT3G12730 64.205 6.72e-72 224.0
Lomi11g02041 ACH,LST 1 326 G2-like Transcription Factor family AT2G03500 37.677 8.05e-55 184.0
Lomi11g02635 LST 1 432 G2-like Transcription Factor family AT2G03500 48.297 1.30e-121 360.0
Lomi12g00143 LST 105 355 G2-like Transcription Factor family AT4G28610 56.078 2.99e-75 236.0
Lomi12g00492 ACH,LST 44 201 G2-like Transcription Factor family AT2G40260 55.625 3.24e-48 164.0
Lomi12g01602 LST 12 259 G2-like Transcription Factor family AT5G42630 42.722 3.40e-51 168.0
Lomi13g00060 . 1 335 G2-like Transcription Factor family AT3G10760 53.026 8.03e-85 256.0
Lomi13g00181 LST 259 322 G2-like Transcription Factor family AT5G06800 60.938 2.63e-17 75.9
Lomi13g00182 LST 183 321 G2-like Transcription Factor family AT5G06800 68.493 2.42e-62 202.0
Lomi13g00291 ACH,LST 1 258 G2-like Transcription Factor family AT3G46640 47.687 6.18e-67 209.0
Lomi13g00352 LST 46 174 G2-like Transcription Factor family AT2G40260 55.97 8.03e-38 137.0
Lomi13g00527 ACH,LST 1 355 G2-like Transcription Factor family AT4G28610 48.677 2.54e-102 308.0
Lomi13g01492 ACH,LST 1 275 G2-like Transcription Factor family AT3G24120 63.799 1.01e-117 337.0
Lomi13g01763 ACH,LST 1 387 G2-like Transcription Factor family AT3G04030 51.741 2.51e-115 339.0
Lomi14g00461 ACH 15 146 G2-like Transcription Factor family AT2G01060 56.818 9.49e-50 163.0
Lomi14g00723 ACH,LST 1 367 G2-like Transcription Factor family AT4G28610 47.57 4.61e-101 305.0
Lomi14g00892 LST 46 174 G2-like Transcription Factor family AT2G40260 55.97 1.87e-36 134.0
Lomi14g00930 . 1 301 G2-like Transcription Factor family AT2G03500 37.864 3.07e-53 180.0
Lomi14g00953 ACH,LST 25 227 G2-like Transcription Factor family AT5G59570 51.101 1.47e-61 194.0
Lomi14g01064 LST 183 324 G2-like Transcription Factor family AT5G06800 68.456 3.80e-64 207.0
Lomi14g01184 . 1 335 G2-like Transcription Factor family AT3G10760 52.023 7.45e-86 258.0
Lomi15g00314 ACH,LST 18 401 G2-like Transcription Factor family AT5G18240 49.144 5.46e-111 328.0
Lomi15g00597 ACH,LST 1 275 G2-like Transcription Factor family AT3G24120 64.516 5.69e-120 343.0
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Lomi Myb_DNA-binding 1.5e-06 CL0123 TF GARP-G2-like