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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00103 ATGGATGATGTTCCAGGATCGATGGGGACTAGTGCAGGGTTCGCTCTGAGACTCGGTCAGACCATCTTCTCATCTGCTTCACTTCTCTTTATGTCGTTTGGTGATCAGTTCTACAGCTATACATCCTTCTGCTTCTTGGTGACGATTATGGGATTAGTTATTCCATGGAGTTTCACATTGGCACTGCTTGATGGATACTCTGTTCTAGTAACACGCCCAATTCGACAAAAGGGGATACTGCTTATCATAGTTATAGGGGATTGGGTGTTATCGATGCTTACATTAGGTGCCGCCTCTTCTGCCGCTAGCGTGGTGGATATCTTGCTGACAGCAGATGAATCTGTCTGCTCTCCTAAAGTCTGCAGCCGATATCTGCTTTCCACCATATTTGCTTTCTTGTCATGGTTTTTGTCTATGGCTTCTGCTCTGTTCAATCTATGGCTTCTTCCATCTTTGTGA 459 45.1 MDDVPGSMGTSAGFALRLGQTIFSSASLLFMSFGDQFYSYTSFCFLVTIMGLVIPWSFTLALLDGYSVLVTRPIRQKGILLIIVIGDWVLSMLTLGAASSAASVVDILLTADESVCSPKVCSRYLLSTIFAFLSWFLSMASALFNLWLLPSL 152
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00103 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 GO:0016020(PANTHER)
Lomi1g00103 152 Pfam Casparian strip membrane protein domain 8 137 IPR006702 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00103 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
323972 Lomi2g04556 Lomi1g00103
333505 Lomi1g00103 Lomi2g04556
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:969733 Lomi12g00740 Lomi-Chr12:8348252 wgd
Lomi Lomi-Chr1:969733 Lomi2g04556 Lomi-Chr2:50552378 wgd
Lomi Lomi-Chr1:969733 Lomi9g01376 Lomi-Chr9:25952568 wgd