AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00106 ATGGGTATATGTGCATCAAACCAGTTCCCAAAACACCAACAAACTTTATTAATCAGTAACGTCCCATCATCAGCGACGAAAGTGATCAACTCAATCGACGGAAATTTACAAGAGTTCCGTCAACCAATCAAAGCAAGCCACGTACTCTCCCAACACCCAAACAACAGCTTCTTCCTATGCAGTTCCGATCACATGTTTGTTAACTATCACGTGCCTCACGTGCCGGAAGAAGAAGATCTCCAGCCGGGTCAGATTTATTTTCTTATGCGGGTTTCAAAATCGTGTAAACCGCTTTCGTTACAAGAACTTTGTTCGTTGGCGATAAAAGCGAGTCTAGCGATTGAAAAAAATTTAAAAATGAAAAATGGTAAGACGGAGTCGTTTAATGGACCGCGTAAAAGGAATGGGAATGCAAAGGTGGATTTTCAGCTGGCGTTAAAGCAGCTTGGGTAA 453 42.16 MGICASNQFPKHQQTLLISNVPSSATKVINSIDGNLQEFRQPIKASHVLSQHPNNSFFLCSSDHMFVNYHVPHVPEEEDLQPGQIYFLMRVSKSCKPLSLQELCSLAIKASLAIEKNLKMKNGKTESFNGPRKRNGNAKVDFQLALKQLG 150
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00106 150 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 23 123 - -
Lomi1g00106 150 Pfam PADRE domain 1 140 IPR025322 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00106 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
118800 Lomi11g02033 Lomi1g00106
323974 Lomi2g04553 Lomi1g00106
333503 Lomi1g00106 Lomi2g04553
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:978987 Lomi2g04554 Lomi-Chr2:50543324 dispersed
Lomi Lomi-Chr1:978987 Lomi11g02033 Lomi-Chr11:28894704 wgd
Lomi Lomi-Chr1:978987 Lomi2g04553 Lomi-Chr2:50540486 wgd
Lomi Lomi-Chr1:978987 Lomi6g00820 Lomi-Chr6:9267018 wgd
Lomi Lomi-Chr1:978987 Lomi9g01375 Lomi-Chr9:25944117 wgd