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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00112 ATGTCGATTTTAGGTACAAATCTGCCTGGCGAGCTTGGTCTGAAGTTGCTTCTAAGTCCACTTGGTTCTAACATTGTCCTAAAAACCGCATGTTGTTCTGTGGGAGTTGTTTTGCCTGTTTATTCTACTTGTAAAGCGATTGAGTCAAATAATAGAACTGAGCAACAAAAGTGGCTTGTATATTGGGCAGCATACGGTACTTTCAGCGTTGCAGAAATGTTTACTGATAAACTTATATCATGGGTTCCACTTTACCATCACGTTAAGTTCGCTTTTCTTGTTTGGCTTCAACTTCCCACCACGAATGGTGCTAAACTCATATACATGAGTCACTTACGCCCTTTCCTTCTGAAGCATCAAGCTAACCTTGATCTAATTGTGGCATTCTTGTACAGCGAAACGGGTAAATTCATTAGTGCCCACGAAGGAGAAATTCAATTCGTTAAGGCAGTTGGGACGAAGATTCTGATGTCAGCAAAGCAATTTGTCAACGATGGCTGTCAACCCATCCCACCTGTCCCACCACCAGAGGGAAGAGCAATTACAGGCCAAACAGATCAAGTAGAGAGCTCTGACTCTTATGACAATGATGCTGCTGCTGATGATGAAGAAGATGGTTATGTAACCGTCCCTCCAACTTAA 642 42.52 MSILGTNLPGELGLKLLLSPLGSNIVLKTACCSVGVVLPVYSTCKAIESNNRTEQQKWLVYWAAYGTFSVAEMFTDKLISWVPLYHHVKFAFLVWLQLPTTNGAKLIYMSHLRPFLLKHQANLDLIVAFLYSETGKFISAHEGEIQFVKAVGTKILMSAKQFVNDGCQPIPPVPPPEGRAITGQTDQVESSDSYDNDAAADDEEDGYVTVPPT 213
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00112 213 MobiDBLite consensus disorder prediction 169 213 - -
Lomi1g00112 213 Pfam TB2-DP1, HVA22 family 39 115 IPR004345 -
Lomi1g00112 213 PANTHER HVA22-LIKE PROTEINS 35 128 IPR004345 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00112 K17279 receptor expression-enhancing protein 5/6
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Event-related genes

Select Gene_1 Gene_2 Event_name
118794 Lomi11g02028 Lomi1g00112
121138 Lomi1g00112 Lomi5g02243
323980 Lomi2g04546 Lomi1g00112
333497 Lomi1g00112 Lomi2g04546
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1014358 Lomi2g04546 Lomi-Chr2:50497568 dispersed
Lomi Lomi-Chr1:1014358 Lomi11g02028 Lomi-Chr11:28847246 wgd
Lomi Lomi-Chr1:1014358 Lomi5g02243 Lomi-Chr5:32794602 wgd