AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00116 ATGGGCTCTTCTGCCAGTTATATCCTCATCTTCATGTATGCACCACTGTTTATTCAGTTTTGCAGTGCTCGGGAAATCTACGACATCCCAAGAAATGATCATGACGAAAAAAGTAATATAGAAATCTATGGAAAGAAAGAAGTTAATTACTTCGATCCTGCTCTAAATGTGTTCTTCCATGTTCAAGATTTATACTCGGGCAAAAAAATGCCAATTTATTTCGCAGTTAACGACCCTTTAACAACTCCTCGGTTATTAGCCAAAGAACATGCCGAATTAATACCATTTTCGTCGTTAAAACTTCCATTCCTTCTCGATTTTATATCGTTATCCGAGGATTCACCACAAGCAAAAGTTATGGAACAAACACTTAAACAATGTGAGCTTGAACCAACACCAGGTGAGACAAGGTTTTGTGCTAGCTCATTAGAGTCCTTACTGGACATGGCACGTGGCATATTGGGTATGGTCAAACTAAAAACATTGACTACCAAGATACATGATTTAGCAAATTCCAATCATACCCTTTTGCAAGAGTATACTTTTTTGAAGGAGCCTTTAGAGATTCATACTTCTGATATGGTGGCTTGTCATACAATGGCTTATCCTTATGCTGTTTTTTATTGTCATGGTCAAAAGGGGTATAATAGGGTTTTTGAGATTTCTTTAGGGGGTGAAAATGGAAATAGAGTTGATGCAATTGCTGTTTGCCATATGGACACTTCTACTTGGGACGCTGATCACGTGGCGTTTCATGTGCTAGGCGACCGCCCTGGCAGTTCGCCGGTGTGTCACTTTCTTCCTGCTGATAACATTGTTTGGATACCGTCGCCATAG 837 39.78 MGSSASYILIFMYAPLFIQFCSAREIYDIPRNDHDEKSNIEIYGKKEVNYFDPALNVFFHVQDLYSGKKMPIYFAVNDPLTTPRLLAKEHAELIPFSSLKLPFLLDFISLSEDSPQAKVMEQTLKQCELEPTPGETRFCASSLESLLDMARGILGMVKLKTLTTKIHDLANSNHTLLQEYTFLKEPLEIHTSDMVACHTMAYPYAVFYCHGQKGYNRVFEISLGGENGNRVDAIAVCHMDTSTWDADHVAFHVLGDRPGSSPVCHFLPADNIVWIPSP 278
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00116 278 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 44 277 IPR044816 -
Lomi1g00116 278 SMART BURP-2 56 277 IPR004873 -
Lomi1g00116 278 ProSiteProfiles BURP domain profile. 58 277 IPR004873 -
Lomi1g00116 278 Pfam BURP domain 57 275 IPR004873 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00116 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
323982 Lomi2g04544 Lomi1g00116
333495 Lomi1g00116 Lomi2g04544
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1035370 Lomi2g04544 Lomi-Chr2:50478109 dispersed
Lomi Lomi-Chr1:1035370 Lomi2g04543 Lomi-Chr2:50459507 wgd