AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00123 ATGCATCTTCTTCTTCTTCGTCCTACACTCTGCTCCTCCTCTCCTCTGCCACATCGCCACCTTCGATTCCGAACATCTCACCAGAAAAACCTCCGGTACCTCAAATCGCTCGGTATCATCCCACCGGGATTTGCAACAAACCCATCTCCAGAAACACTTCCTCATATTCTATCAACCATAGACTACTTCAAATCCAAAGGCTTTTCCGAGCCAGATTTCTCAAGAATTGCCTTTCTCTCCCCACATATATTCACCCCATCATTCGATCCAATAGCCACTGAACCGGTTTTCGAGTTTTTAACCAATGAGTTAGCTGCCTCATTGGAGGACTCCCGTGGGTTGATCCTGAAATGCCCTCACATTCTTGAATCAGACCCAGATTACTGCTTGAAACCGACACTTAATTACCTTACAAAGTTAGGAATTAAGCAGTTGAACTCTCCTACAACTTTGAATGCTCATTTATTGGATACAAGAGTGGATAAATTAGAAGAGAAAATGAGGTTCTTACAAAGCGTTGGGTTCACCGTCGAGGAATCAAGAAAAGTTTGTGGGCGGTTTCCCGCGATATTTGGGTACGGGATAGAGCATAATTTGAAGCCAAAGTTTGAGTATTTGGTTTGGAAAATGAAGAGGAATGGTAGAGAAGAAGTGAACAAGTTTCCGCAGTATTTTGGGTTCAGTTTGGGAAATAGAATAAAGCCTAGACATCTACATTTGAAACAGAGGAATGTTGATTGTGAGGTACCCTTGAACAGAATGCTGTTATGGAGTGATGAAAGATTTTACAAGAAATGGAAATGA 804 42.04 MHLLLLRPTLCSSSPLPHRHLRFRTSHQKNLRYLKSLGIIPPGFATNPSPETLPHILSTIDYFKSKGFSEPDFSRIAFLSPHIFTPSFDPIATEPVFEFLTNELAASLEDSRGLILKCPHILESDPDYCLKPTLNYLTKLGIKQLNSPTTLNAHLLDTRVDKLEEKMRFLQSVGFTVEESRKVCGRFPAIFGYGIEHNLKPKFEYLVWKMKRNGREEVNKFPQYFGFSLGNRIKPRHLHLKQRNVDCEVPLNRMLLWSDERFYKKWK 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00123 267 SMART mt-12 112 143 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Lomi1g00123 267 SMART mt-12 148 176 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Lomi1g00123 267 SMART mt-12 181 213 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Lomi1g00123 267 SMART mt-12 215 246 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Lomi1g00123 267 PANTHER CGI-12 PROTEIN-RELATED 55 265 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Lomi1g00123 267 Pfam mTERF 109 262 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Lomi1g00123 267 Gene3D Transcription termination factor 3, mitochondrial 26 267 IPR038538 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00123 K15031 mitochondrial transcription termination factor family protein
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Lomi mTERF 3.6e-31 No_clan TR mTERF