Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi1g00125	ATGAAAGAAAAATTAATACAAAGATTAGAGGCCGCTGTAACGCGGCTGGAATCGCTATCTCTCGGTTGTTCTCATCCCCAAGCTGTCTCACTTGACTCTGCATCAGCCTCATCAGAACCGTCGATTGTTGCATTTGCTGATCTGATCACAGAATACGTTGGTAAGGTTTCTGCTATTGCAGACAAGATTGGGGGACAAGTTAAGGATGTTACGAATGTTCTTAGTCAGGCTTTTGCTGCTCAGAAGGAGCTTCTTGTTAAAATCAAACAAACTCAGAAACCTGATGGGGGAGGAATGGCCGAACTTCTTGGGCCATTAAATGAAAAGTTAACAGAAGCAAATAGCATGTCAGAAGGACGGCGTTCTGATTTCTTTAATCACTTAAAATCTGCTTCTGAGAGTCTGACTGCTTTAGCATGGATTGCATATACAGGGAAAGATTGCGGAATGAGCATGCCTATTGGACATGTTGAAGACTGCTGGCAGTCAGCCGAATTCTATAGTAACAAGGTTCTTGTAGAGTACAAAAATAAAGATGCAGATCATGTGGAATGGGTTAAAGCTCTGAAGGAACTTTATGTACCAGGTTTGAGAGATTACGTGAAGAGTCACTATCCTTTGGGCCTGGTTTGGGGTGCAACAGGAGCTACCGTATTGGCTCCAGCCAAGTGTTCGAAACCAGGTGCTCCTAGCGCTCCAAATCCTCCACCAGCATCACTTGCAAGCTTGGGTTCTTCATCAGCATCATCATCATCATCTTCATCTAAACCAAAGCAAGGAATGGCTGCTGTTTTTCAAGAAATTAGTTCAAAGCCTGTTACTGCTGGATTAAGAAAAGTTACAGATGATATGAAGACTAAAAACCGCACAGATAGAGCCGGCTTTGTGAGTTCTGGTGAAAAAGAAGTCCGCAAGAGTGCGCCATCAGCTGCTAAAGTTGAACCTCCAAAGCTCGAGCTTGTGATGGGCCGCAAATGGGTTGTTGAATATCAAATTGGCGTGAAGGATTTATCAATTGATGAGTGTGATCCAAGGCAGACAGTTTATATATTTGGATGCAAAGATTCAGTTCTACAGATCAAAGGGAAAGTTAACAACATAACTGTTGACAAATGCACGAAAATGGGTGTTGTATTTACGGACGTTGTTGCTGCTTTTGAGATTGTCAATTGTAGCGGCGTTGAGGTGCAATGCCAGGGTGCAGCACCTACAATTTCAATAGACAACACGGCAGGTTGCCAGTTATACTTGAGCAAAGATTCACTCGGTTCTTCTTTAACAACTGCTAAGGCAAGTGAAGTTAATGTCATGGTTCCTGCTGAAGATCCTAATGCTGATCTGGCGGAACATGCTTTGCCACAGCAGTACATTCACACGTACCAGGATGGCCACTTTGTTACGACCCCCGTCTCGCACTCTGGAGGGTAA	1428	43.77	MKEKLIQRLEAAVTRLESLSLGCSHPQAVSLDSASASSEPSIVAFADLITEYVGKVSAIADKIGGQVKDVTNVLSQAFAAQKELLVKIKQTQKPDGGGMAELLGPLNEKLTEANSMSEGRRSDFFNHLKSASESLTALAWIAYTGKDCGMSMPIGHVEDCWQSAEFYSNKVLVEYKNKDADHVEWVKALKELYVPGLRDYVKSHYPLGLVWGATGATVLAPAKCSKPGAPSAPNPPPASLASLGSSSASSSSSSSKPKQGMAAVFQEISSKPVTAGLRKVTDDMKTKNRTDRAGFVSSGEKEVRKSAPSAAKVEPPKLELVMGRKWVVEYQIGVKDLSIDECDPRQTVYIFGCKDSVLQIKGKVNNITVDKCTKMGVVFTDVVAAFEIVNCSGVEVQCQGAAPTISIDNTAGCQLYLSKDSLGSSLTTAKASEVNVMVPAEDPNADLAEHALPQQYIHTYQDGHFVTTPVSHSGG	475

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi1g00125	475	Gene3D	-	314	474	IPR016098	-
	Lomi1g00125	475	Pfam	Adenylate cyclase associated (CAP) C terminal	314	472	IPR013912	GO:0003779(InterPro)\|GO:0007010(InterPro)
	Lomi1g00125	475	FunFam	Adenylyl cyclase-associated protein	41	216	-	-
	Lomi1g00125	475	Pfam	CAP, N-terminal domain	45	209	IPR053950	-
	Lomi1g00125	475	SUPERFAMILY	N-terminal domain of adenylylcyclase associated protein, CAP	41	237	IPR036222	-
	Lomi1g00125	475	ProSiteProfiles	C-CAP-cofactor C-like domain profile.	315	452	IPR017901	-
	Lomi1g00125	475	Pfam	CAP N-terminal conserved motif	3	40	IPR013992	GO:0003779(InterPro)\|GO:0007010(InterPro)
	Lomi1g00125	475	FunFam	Adenylyl cyclase-associated protein	314	474	-	-
	Lomi1g00125	475	MobiDBLite	consensus disorder prediction	224	257	-	-
	Lomi1g00125	475	MobiDBLite	consensus disorder prediction	238	257	-	-
	Lomi1g00125	475	PANTHER	ADENYLYL CYCLASE-ASSOCIATED PROTEIN	2	473	IPR001837	GO:0003779(InterPro)\|GO:0003779(PANTHER)\|GO:0005737(PANTHER)\|GO:0007010(InterPro)\|GO:0007015(PANTHER)\|GO:0008179(PANTHER)\|GO:0019933(PANTHER)
	Lomi1g00125	475	Gene3D	-	41	216	IPR036222	-
	Lomi1g00125	475	SMART	carp	391	428	IPR006599	-
	Lomi1g00125	475	SMART	carp	353	390	IPR006599	-
	Lomi1g00125	475	SUPERFAMILY	C-terminal domain of adenylylcyclase associated protein	315	474	IPR036223	-
	Lomi1g00125	475	ProSitePatterns	CAP protein signature 1.	5	17	IPR018106	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi1g00125	K17261	adenylyl cyclase-associated protein

Event-related genes

Select	Gene_1	Gene_2	Event_name
	121143	Lomi1g00125	Lomi3g00853
	121144	Lomi1g00125	Lomi4g02531
	323985	Lomi2g04538	Lomi1g00125
	333492	Lomi1g00125	Lomi2g04538

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:1096523	Lomi2g04538	Lomi-Chr2:50425834	wgd
	Lomi	Lomi-Chr1:1096523	Lomi3g00853	Lomi-Chr3:6944023	wgd
	Lomi	Lomi-Chr1:1096523	Lomi4g02531	Lomi-Chr4:32920938	wgd