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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00138 ATGGCGGCTGCATCTTCTTCTCATCTCCATCTTCAATCACTCTCATTTTCCAAAACCCTAATTAATCAATCCCCAATCACAACCACACCGAAAACCCTAATTTCATTCAAACCCAATTCAAGAATAACTCCATTTTCCATCCGAGCAGTCGTATCACAAACCCAAAAATTTAATCACTGTTTTACTAAAAATGATGATGGCCATTTGTACTGTGAAGGACTTAAAGTTCAAGAAGTAATGGAAGTTGTTGAAAAAAGGCCCTTCTATCTTTATAGTAAACCCCAAATAACAAGAAATGTTGAGGCTTATAAAGATGCTTTAGAAGGATTGAATTCAGTTATTGGGTATGCTATTAAAGCTAATAATAATTACATGATTTTACAACATTTGAGGAGTTTGGGGTGTGGTGCTGTTTTGGTTAGTGGGAATGAACTTAGATTAGCACTCCGTGCTGGTTTTGATCCTACAAGGTGTATTTTTAATGGAAATGGGAAGCTTTTGGAGGATCTTGTTCTTGCTGCTCAAGAAGGTGTATTTGTTAACATAGACAGTGAATTTGATTTGGATAATATTGTATCAGCTGCAAGAATTTCTGGAAAGAAGGTTAATGTACTGCTTCGAATTAATCCAGATGTTGACCCTCAGGTTCATCCTTACGTTGCAACGGGAAACAAGAACTCAAAATTTGGAATAAGAAATGAGAAATTGCAATGGTTTTTAGATGCCGTTAAGTCTTATCCTGATGAACTTAAGCTGGTTGGGGCTCATTGCCATCTTGGATCTACCATTACAAAGGTTGACATATTCAGAGATGCTGCGGCCATTATGGTAAAGTTTATTGATGAAATTCGAGCCCAAGGGTTTGATATTAACTATTTGAACATTGGAGGTGGTCTCGGGATCGATTATTATCATAAGGGTACCGTCCTTCCAACACCAAGAGATCTCATTGACACAGTCCGGGAGCTAGTCAAGTCTCGAAACCTTAATTTAATCATTGAACCTGGAAGATCAATTATTGCAAATACGTGTTGTTTGGTCAATCGTGTCACTGGTGTAAAAACGAATGGCACGAAAAACTTTATTGTCATTGATGGCAGCATGGCTGAACTTATCCGTCCTAGCCTATACGATGCTTATCAACACATAGAACTGGTTTCTCCTCCACCACCTGATTCTCCGGTTACGACTTTTGATGTTGTGGGCCCTGTCTGTGAATCGGCCGATTTCTTGGGAAAGAATAGGGACCTTCCTGCTCCAGCCAGGGGTTCTGGGCTGGTAGTTCATGATGCAGGTGCCTACTGCATGAGTATGGCTTCAACATACAACCTTAAAATGCGGCCACCTGAATATTGGGTTGAAGAAAATGGATCAGTAGCCAAAATCAGGCATGGGGAGACTTTTGAAGATCATATGAGATTTTTTGAAGGACTCTGA 1437 39.67 MAAASSSHLHLQSLSFSKTLINQSPITTTPKTLISFKPNSRITPFSIRAVVSQTQKFNHCFTKNDDGHLYCEGLKVQEVMEVVEKRPFYLYSKPQITRNVEAYKDALEGLNSVIGYAIKANNNYMILQHLRSLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVSAARISGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHCHLGSTITKVDIFRDAAAIMVKFIDEIRAQGFDINYLNIGGGLGIDYYHKGTVLPTPRDLIDTVRELVKSRNLNLIIEPGRSIIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPPDSPVTTFDVVGPVCESADFLGKNRDLPAPARGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVEENGSVAKIRHGETFEDHMRFFEGL 478
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00138 478 CDD PLPDE-III-DapDC 87 453 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi1g00138 478 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 86 472 IPR009006 GO:0003824(InterPro)
Lomi1g00138 478 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 95 341 IPR022644 GO:0003824(InterPro)
Lomi1g00138 478 SUPERFAMILY Alanine racemase C-terminal domain-like 317 473 IPR009006 GO:0003824(InterPro)
Lomi1g00138 478 NCBIfam diaminopimelate decarboxylase 62 472 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi1g00138 478 Gene3D Alanine racemase 93 338 IPR029066 -
Lomi1g00138 478 PRINTS Diaminopimelate decarboxylase signature 134 151 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi1g00138 478 PRINTS Diaminopimelate decarboxylase signature 359 377 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi1g00138 478 PRINTS Diaminopimelate decarboxylase signature 222 231 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi1g00138 478 PRINTS Diaminopimelate decarboxylase signature 442 464 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi1g00138 478 PANTHER DIAMINOPIMELATE DECARBOXYLASE 52 475 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Lomi1g00138 478 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 136 148 IPR000183 GO:0003824(InterPro)
Lomi1g00138 478 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 432 445 IPR000183 GO:0003824(InterPro)
Lomi1g00138 478 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 116 134 IPR000183 GO:0003824(InterPro)
Lomi1g00138 478 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 331 350 IPR000183 GO:0003824(InterPro)
Lomi1g00138 478 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 249 262 IPR000183 GO:0003824(InterPro)
Lomi1g00138 478 FunFam Diaminopimelate decarboxylase 319 472 - -
Lomi1g00138 478 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 285 300 IPR022657 -
Lomi1g00138 478 SUPERFAMILY PLP-binding barrel 86 342 IPR029066 -
Lomi1g00138 478 Hamap Diaminopimelate decarboxylase [lysA]. 73 476 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi1g00138 478 FunFam Diaminopimelate decarboxylase 93 338 - -
Lomi1g00138 478 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 116 134 IPR022653 -
Lomi1g00138 478 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 342 432 IPR022643 GO:0003824(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00138 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
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Event-related genes

Select Gene_1 Gene_2 Event_name
323989 Lomi2g04522 Lomi1g00138
333488 Lomi1g00138 Lomi2g04522
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1203843 Lomi2g04522 Lomi-Chr2:50297239 wgd