Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi1g00148	ATGGCAAAAGTGTCCCGGAGCCGTACGACGGCAAAAACCCTAGATACTTACACAATTACTATCAAAGACGCTACCATTTCCATTAAACCTGGCGACAATGTAATGATGCAATCACCTTTTTGGTACGATGAACCGCACTATATCGCGAAAATTGCGAAGATTTTACGAAGTAACAGAAGACGTAATCCTCACGTGAAAGTTCAGATCCACTGGTATTATAGACCGGAAGATTCAATCGGTGGCCGGAGAACATTTCACGGAATAAAAGAATTATTTTCTTCCGATCACGTGGATGTACAATTAGTTGATACGATTATCGGAAAGTGTAATGTGTACACTATGGATGATTATAAGGACCTCGATAAAGTTGAAGAAAACGATTTTTTCTGTCGTTTTGAGTATCACTGTTTGACTGGTGAATTCAGTCCGGATGCAGTAATGGTGCATTGCAAGTGTCAGATGCCTGAAAATCCTGATGTAGAAATGGTTGAGTGTGAAGAATGTGGTGATAGGTTTCATCCAGCTTGTGTAGACATGACCACCGACATGGCTAAACGATTGGAGCATTTCTTTTGTCGGCCCTGTTTGTCCGTAACACCAAGACTTTTCCTCCAAAATTCTCATTCTTCATGA	633	40.92	MAKVSRSRTTAKTLDTYTITIKDATISIKPGDNVMMQSPFWYDEPHYIAKIAKILRSNRRRNPHVKVQIHWYYRPEDSIGGRRTFHGIKELFSSDHVDVQLVDTIIGKCNVYTMDDYKDLDKVEENDFFCRFEYHCLTGEFSPDAVMVHCKCQMPENPDVEMVECEECGDRFHPACVDMTTDMAKRLEHFFCRPCLSVTPRLFLQNSHSS	210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi1g00148	210	ProSiteProfiles	BAH domain profile.	26	145	IPR001025	GO:0003682(InterPro)
	Lomi1g00148	210	Pfam	BAH domain	27	142	IPR001025	GO:0003682(InterPro)
	Lomi1g00148	210	PANTHER	OS08G0421900 PROTEIN	5	198	-	-
	Lomi1g00148	210	SMART	PHD-3	149	196	IPR001965	-
	Lomi1g00148	210	ProSitePatterns	Zinc finger PHD-type signature.	150	195	IPR019786	-
	Lomi1g00148	210	Gene3D	Zinc-RING finger domain, C3HC4 (zinc finger)	143	210	IPR013083	-
	Lomi1g00148	210	SMART	BAH-4	26	145	IPR001025	GO:0003682(InterPro)
	Lomi1g00148	210	Gene3D	-	2	142	IPR043151	-
	Lomi1g00148	210	SUPERFAMILY	FYVE-PHD zinc finger	139	201	IPR011011	-
	Lomi1g00148	210	SUPERFAMILY	BAH domain	14	132	-	-
	Lomi1g00148	210	Pfam	PHD-finger	150	195	IPR019787	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi1g00148	K25868	chromatin remodeling protein

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:1299659	Lomi5g02193	Lomi-Chr5:32410045	dispersed
	Lomi	Lomi-Chr1:1299659	Lomi3g00830	Lomi-Chr3:6733260	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Lomi	BAH	1.4e-16	No_clan		TR	PHD