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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00151 ATGGGGAATGTAAATCAAACACCCCAACACAATCCACACCCTGATCAACAACAAATTGAAGACCAACAACAACAATTATCATCATCAACAACATTTACTTGTGAAATTTGCATAGAACCAGTGACACTACCAAACACAAAATTTCGAAACAGTAACAAATGTGTTCACCCATTCTGCACTGATTGTATGATCAAATACATTCAAGTAAAGCTAGAAGACAACGTATCTGATATCAAGTGTCCATCCTTAACTTGCGATCACTCGTTAGAACCATTATCTTGTCGACCCAAAATTGCACACCAGCTGTTTGATAAATGGTGTGATGTGTTATGTGAGTCTTTTGTGTTAGGGTTTGATAGGGTTTATTGTCCTAATAGAGATTGTTCAGCTTTGGTTGTTAATGAATGTGGTAATGCTGGTAATTTGAAACGATGTGTGTGTCCGAATTGCAAGCAACCGTTTTGTTTTAAGTGTAAAGTTCCTTGGCATGCTGGGTATAGGTGTGAAGAAAGTGGGGAGATGAGGGATCTACACGATATTGCGTTTGGTGTTCTTTCTGAACGGAATCAGTGGATGAGGTGCCCTGTGTGTCGACATTGTGTTGAGCTTGTTAAAGGTTGTGCCATTGTTCGTTGCAGATGTGGAATTGAGTTTTGCTACAGGTGTGGGAAAAAGGTTGATCACCATTGGTGCAACTGTCGAAGATCGTCTACATGTTGTATGTGGCTATTTCACCTGTGCATAGTGCTTTTGATTCTATGGCCATTCTTTCTTCTATTTACAGCTATATCAAGAAGGAACCACCATTGA 810 39.63 MGNVNQTPQHNPHPDQQQIEDQQQQLSSSTTFTCEICIEPVTLPNTKFRNSNKCVHPFCTDCMIKYIQVKLEDNVSDIKCPSLTCDHSLEPLSCRPKIAHQLFDKWCDVLCESFVLGFDRVYCPNRDCSALVVNECGNAGNLKRCVCPNCKQPFCFKCKVPWHAGYRCEESGEMRDLHDIAFGVLSERNQWMRCPVCRHCVELVKGCAIVRCRCGIEFCYRCGKKVDHHWCNCRRSSTCCMWLFHLCIVLLILWPFFLLFTAISRRNHH 269
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00151 269 SUPERFAMILY RING-U-box 113 170 - -
Lomi1g00151 269 ProSiteProfiles TRIAD supradomain profile. 30 243 IPR044066 -
Lomi1g00151 269 ProSitePatterns Zinc finger RING-type signature. 54 63 IPR017907 -
Lomi1g00151 269 ProSiteProfiles Zinc finger RING-type profile. 34 81 IPR001841 -
Lomi1g00151 269 Pfam IBR domain, a half RING-finger domain 105 168 IPR002867 GO:0008270(InterPro)
Lomi1g00151 269 SUPERFAMILY RING-U-box 181 235 - -
Lomi1g00151 269 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 27 115 IPR013083 -
Lomi1g00151 269 SMART ibrneu5 104 168 IPR002867 GO:0008270(InterPro)
Lomi1g00151 269 Gene3D - 184 241 - -
Lomi1g00151 269 FunFam RBR-type E3 ubiquitin transferase 29 117 - -
Lomi1g00151 269 MobiDBLite consensus disorder prediction 1 22 - -
Lomi1g00151 269 SUPERFAMILY RING-U-box 29 114 - -
Lomi1g00151 269 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 18 237 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00151 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1328269 Lomi1g03477 Lomi-Chr1:46994476 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00151 . 113 321 ARIADNE family AT3G27710 24.434 8.55e-11 60.1
Lomi5g02246 LST 1 597 ARIADNE family AT4G34370 67.333 0.0 835.0
Lomi8g02346 ACH 4 531 ARIADNE family AT1G65430 68.045 0.0 759.0
Lomi9g02117 LST 4 567 ARIADNE family AT1G65430 72.491 0.0 848.0
Lomi11g02031 LST 1 597 ARIADNE family AT4G34370 67.0 0.0 832.0
Lomi12g00232 LST 4 567 ARIADNE family AT1G65430 73.183 0.0 862.0
Lomi15g00571 ACH,LST 4 567 ARIADNE family AT1G65430 68.348 0.0 804.0