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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00162 ATGATAAATAAAATGAAGTCTACAGTATCATTATTATTAACTCTATCAATATCACTGTTTTTCAACACTTGTGCTTACTCAAAAAGACCTGATGTTGTTAATGTTGGAGCTCTTTTTTCATTTGATTCAGTTATTGGTAAAGCTGCAAAAGCAGCTATGGAAACTGCTGTTGTTGATGTGAATGATGATTCAAGTATTCTTAATGGTACTCGAATGAAGTTGTTCATGGATGATACTAATTGCAGTGTCTTCAAGAGTTCAATTGAAGCATTTGAGATGCTCGAGAGAGATGTGGTGGCGATAATTGGTCCACAATCATCCACTGTAGCTCATATGATTTCTCAACTTGCAAATGGTGTACAAGTACCAATAATTTCATTTGCCGCCACGGATCCTACTTTATCTTCCCTCCAATTCCCGTACTTCTTTAGAACCACGCAAAGTGACTCGTACCAAATGGCAGCCATGGCAAATTTGATCGACTTCTATGGGTGGAAAGAAGTGATTGCAATATATGTTGATGATGAATATGGGAGAAATGGAATTTTTTCTTTAGATGATGAAGTAGAAAAGAGAAAGTCAAAGATTTCTTATAAGTTAGCTTTGCCTACTAATTTTAATCTTAATGATATTATTAAAGTTCTTAATGAATCGATCCCACTTGGTCCTCGTGTTTATATTGTCCATATTAATCCTGATCCTGCTCTTAAAGTCTTTGAAGTAGCGAATAAGCTAAGTATGATGACAAGTGATTATGTATGGTTAACAACAGATTGGCTTTGTACCACTTTAGCATCGTTTAGCCCAACGAATCAGGAGTTTTTTCGAATTATTGAGGGGGTCGTTGGTATTTGCCAGCATACTCTACAAGCATCAATGAAAGAGAATTTTGAATCGAATATATATGGGTCATTTGCGTATGATACTGTGTGGACTGTAGCACACACGATTGATACGTTTCTTAATCAAGAAAAAAATATGACATTTTCATTAGTCGGTTCACAGCTTGGGAAACTAAAGGTATTTGATAATGGGGATCATTTTGTCAAGATATTATCAGAGACGAAATTTGATGGTTTGACTGGCCCGATTCACTTCGATGCGGATAGAAACTTGGTTCCTCGTGGATATGAAGTTTTTAATATGGTCAAACTAGCAATGCATAATGTTGGTTATTGGTCAAAGCATTCGGGTCTCTCTATTATGCCACCTGAATCTCTAAAAGTGAATAAAAGTAGCTCTTTGGACTTAAATGAAACACTCGGTATAATTACTTGGCCCGGTGGAAAAACGGATCGTCCTCGTGGATGGGTCATTGGGGATACAGAAAGACCGTTAAGAATTGGGATACCAAAACGAGCTAGTTTTGTTGAATTTGTGACAGAATTAAGTAATCATACAATTGAGGGATACTGTATTGATGTGTTTAGAGAAGCACTCAGTTTAGTTCCTTATGAACTCCCTTACAAATTTGTGCCATTTGGAGATGGTCAGACCAACCCTAGTTATGACCAACTTGTACAGTTCGTTTCAGACGATATTTTTGATGGGGCGGTTGGAGATATTGCTATTGTGACAAATAGAACAAAGATTGTTGATTACACACAACCTTATGCGACAACTGGTCTCGTGATAGTGGTTCCTTTAAACAATCAAAAAGCGAGTAAGTGGGTATTTCTTAGACCATTTACATTAGAAATGTGGTGTGTCACTGCAGGGGCTTTTGTATTGATTGCTCTTGTTATTTGGCTTCTCGAGCATCGTGTTAATAACGATTTCAGGGGTCCACTTAAGAGACAACTTGTTACGATTTTCTTGTTTAGCTTTTCGACACTGTTCAAGAGAAACCAGGAAGATACAATTAGCCCACTTGGGCGTATGGTGATGGTAGTATGGCTGTTCTTGTTAATGGTGATCACATCAAGCTACACTGCAAGTTTAACGTCCATTCTTACAGTACAACAACTTTCATCACCCATCACGGGGATTGATAGCTTAGTGGCTAGTCATCTACCAATCGGGTACCAACTTGGATCATTTGCACATACTTATTTGGAAGAAAGTCTTTACATACCTCGATCTAGGCTTATTCCTCTAGGGTTAGCAAATGATTATGATAAAGCATTGCGGTTAGGGCCTCATAATGGAGGGGTGGCAGCCATTGTTGATGAACTTCCTTATATCGAGTTGTTTCTATCTGAATATGCTGATTATGGAATCGTTGGTCAACCATTTACTAGAAGTGGATGGGGATTTGCTTTTAAGAGAGACTCTCCTCTTGCGACAACACTATCCTTGTCAATTCTGCAACTTTCCGAAAACGGAAAGCTTCAACAAATCCACGACAAATGGTTCTGCCAGAAAGGCTGTTCAACCGCTGTGGGGAGTGATTCCGAGCCTAACCAGTTGCAAATGAGCAGCTTTTGGGGTCTATTCATAATTTGTGGTGCTTTCTCACTTACTGCATTGGTTATATTTTTGCTACAAACCATTCGTCAGTATATTTTTTACAAACAAAAGCAGATATTGGACCCGCGCTCGCCCTCATTCCCAACTTCATTTTCAGCATCATCGAGAAGGGGATGTTACGGCGTCTTTTTAAACTTTTGTGAATTTATTGACGAAAAGGAAGAAGCTATCAAGAATATGTTCAAGAAAGATGATGAAACACCTCAAACTGTTTAG 2685 38.29 MINKMKSTVSLLLTLSISLFFNTCAYSKRPDVVNVGALFSFDSVIGKAAKAAMETAVVDVNDDSSILNGTRMKLFMDDTNCSVFKSSIEAFEMLERDVVAIIGPQSSTVAHMISQLANGVQVPIISFAATDPTLSSLQFPYFFRTTQSDSYQMAAMANLIDFYGWKEVIAIYVDDEYGRNGIFSLDDEVEKRKSKISYKLALPTNFNLNDIIKVLNESIPLGPRVYIVHINPDPALKVFEVANKLSMMTSDYVWLTTDWLCTTLASFSPTNQEFFRIIEGVVGICQHTLQASMKENFESNIYGSFAYDTVWTVAHTIDTFLNQEKNMTFSLVGSQLGKLKVFDNGDHFVKILSETKFDGLTGPIHFDADRNLVPRGYEVFNMVKLAMHNVGYWSKHSGLSIMPPESLKVNKSSSLDLNETLGIITWPGGKTDRPRGWVIGDTERPLRIGIPKRASFVEFVTELSNHTIEGYCIDVFREALSLVPYELPYKFVPFGDGQTNPSYDQLVQFVSDDIFDGAVGDIAIVTNRTKIVDYTQPYATTGLVIVVPLNNQKASKWVFLRPFTLEMWCVTAGAFVLIALVIWLLEHRVNNDFRGPLKRQLVTIFLFSFSTLFKRNQEDTISPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPITGIDSLVASHLPIGYQLGSFAHTYLEESLYIPRSRLIPLGLANDYDKALRLGPHNGGVAAIVDELPYIELFLSEYADYGIVGQPFTRSGWGFAFKRDSPLATTLSLSILQLSENGKLQQIHDKWFCQKGCSTAVGSDSEPNQLQMSSFWGLFIICGAFSLTALVIFLLQTIRQYIFYKQKQILDPRSPSFPTSFSASSRRGCYGVFLNFCEFIDEKEEAIKNMFKKDDETPQTV 894
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00162 894 CDD GluR-Plant 444 785 - -
Lomi1g00162 894 Pfam Bacterial extracellular solute-binding proteins, family 3 460 564 IPR001638 -
Lomi1g00162 894 SUPERFAMILY Periplasmic binding protein-like I 29 399 IPR028082 -
Lomi1g00162 894 Gene3D - 51 374 - -
Lomi1g00162 894 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 849 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lomi1g00162 894 SMART GluR-14 445 787 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lomi1g00162 894 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 237 260 - -
Lomi1g00162 894 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Lomi1g00162 894 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 46 62 - -
Lomi1g00162 894 Gene3D - 556 686 - -
Lomi1g00162 894 FunFam Glutamate receptor 441 556 - -
Lomi1g00162 894 PIRSF IGluLR-plant 3 893 IPR017103 -
Lomi1g00162 894 Gene3D - 148 399 - -
Lomi1g00162 894 FunFam Glutamate receptor 682 789 - -
Lomi1g00162 894 Pfam Ligand-gated ion channel 786 816 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lomi1g00162 894 SUPERFAMILY Periplasmic binding protein-like II 421 787 - -
Lomi1g00162 894 Gene3D - 443 555 - -
Lomi1g00162 894 FunFam Glutamate receptor 148 313 - -
Lomi1g00162 894 CDD PBP1-GABAb-receptor-plant 34 400 IPR044440 -
Lomi1g00162 894 PRINTS Metabotropic glutamate GPCR signature 101 127 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lomi1g00162 894 PRINTS Metabotropic glutamate GPCR signature 168 185 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lomi1g00162 894 PRINTS Metabotropic glutamate GPCR signature 133 152 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lomi1g00162 894 PRINTS Metabotropic glutamate GPCR signature 152 168 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lomi1g00162 894 FunFam Glutamate receptor 556 686 - -
Lomi1g00162 894 Gene3D - 733 792 - -
Lomi1g00162 894 Pfam Receptor family ligand binding region 49 383 IPR001828 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00162 K05387 glutamate receptor, ionotropic, plant
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1440460 Lomi2g04503 Lomi-Chr2:50095733 dispersed
Lomi Lomi-Chr1:1426894 Lomi1g00162 Lomi-Chr1:1440460 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00161 . 56 932 Ion Channels gene family AT1G05200 64.48 0.0 1211.0
Lomi1g00162 . 26 902 Ion Channels gene family AT2G32400 53.394 0.0 981.0
Lomi1g00378 ACH 78 604 Ion Channels gene family AT5G54250 71.347 0.0 771.0
Lomi1g00540 LST 68 363 Ion Channels gene family AT5G55630 62.838 9.70e-140 400.0
Lomi1g00617 ACH,LST 6 779 Ion Channels gene family AT5G49890 76.486 0.0 1159.0
Lomi1g00796 LST 3 719 Ion Channels gene family AT4G30360 66.125 0.0 992.0
Lomi1g00858 ACH,LST 528 713 Ion Channels gene family AT5G37500 31.053 2.29e-12 68.2
Lomi1g00898 ACH,LST 7 857 Ion Channels gene family AT2G26650 68.119 0.0 1224.0
Lomi1g02278 LST 1 674 Ion Channels gene family AT5G46240 54.545 0.0 795.0
Lomi1g02365 . 14 862 Ion Channels gene family AT2G29120 35.086 1.31e-161 496.0
Lomi1g02824 ACH 1 678 Ion Channels gene family AT2G28260 70.438 0.0 1014.0
Lomi1g03031 ACH,LST 548 727 Ion Channels gene family AT4G32500 30.392 6.42e-16 79.3
Lomi1g03114 ACH 50 675 Ion Channels gene family AT2G28260 55.924 0.0 751.0
Lomi1g03157 . 548 715 Ion Channels gene family AT2G25600 34.32 2.71e-13 66.2
Lomi1g03542 LST 28 661 Ion Channels gene family AT4G32650 58.529 0.0 742.0
Lomi1g04003 LST 12 912 Ion Channels gene family AT1G42540 65.743 0.0 1239.0
Lomi1g04007 . 8 838 Ion Channels gene family AT2G29110 29.63 1.03e-92 310.0
Lomi1g04008 LST 20 844 Ion Channels gene family AT2G29110 29.502 1.55e-93 311.0
Lomi1g04227 ACH,LST 1 745 Ion Channels gene family AT3G17700 59.788 0.0 874.0
Lomi1g04334 LST 4 733 Ion Channels gene family AT4G03560 64.658 0.0 1009.0
Lomi2g00001 ACH 90 344 Ion Channels gene family AT5G40890 24.715 4.13e-07 51.6
Lomi2g00171 LST 3 726 Ion Channels gene family AT4G03560 64.227 0.0 991.0
Lomi2g00247 . 461 564 Ion Channels gene family AT3G17690 74.038 6.36e-48 160.0
Lomi2g00248 LST 369 458 Ion Channels gene family AT3G17700 62.5 1.41e-35 125.0
Lomi2g00425 LST 12 925 Ion Channels gene family AT1G42540 65.137 0.0 1237.0
Lomi2g00645 . 6 745 Ion Channels gene family AT3G17700 57.371 0.0 841.0
Lomi2g00851 ACH,LST 28 661 Ion Channels gene family AT4G32650 58.32 0.0 743.0
Lomi2g02046 LST 1 674 Ion Channels gene family AT5G46240 54.809 0.0 793.0
Lomi2g03547 ACH 37 816 Ion Channels gene family AT5G48410 36.386 3.56e-166 502.0
Lomi2g03623 ACH,LST 7 857 Ion Channels gene family AT2G26650 67.317 0.0 1216.0
Lomi2g03670 . 1 765 Ion Channels gene family AT5G33280 73.464 0.0 1136.0
Lomi2g03685 ACH,LST 615 726 Ion Channels gene family AT4G32500 32.456 2.92e-12 62.8
Lomi2g03722 ACH 1 717 Ion Channels gene family AT5G57940 77.21 0.0 1137.0
Lomi2g03762 LST 3 719 Ion Channels gene family AT4G30360 66.712 0.0 997.0
Lomi2g03766 ACH 490 863 Ion Channels gene family AT2G17260 34.375 2.26e-55 197.0
Lomi2g03980 ACH,LST 6 779 Ion Channels gene family AT5G49890 76.357 0.0 1160.0
Lomi2g04087 ACH,LST 68 363 Ion Channels gene family AT5G55630 63.851 4.98e-142 405.0
Lomi2g04503 . 8 903 Ion Channels gene family AT2G32400 53.045 0.0 982.0
Lomi2g04504 . 56 932 Ion Channels gene family AT1G05200 64.14 0.0 1206.0
Lomi3g00505 . 12 885 Ion Channels gene family AT2G29120 45.506 0.0 781.0
Lomi3g00506 . 54 396 Ion Channels gene family AT5G27100 44.0 2.10e-95 301.0
Lomi3g00507 . 47 934 Ion Channels gene family AT2G29120 44.912 0.0 765.0
Lomi3g00702 LST 4 848 Ion Channels gene family AT2G29120 31.855 1.31e-134 423.0
Lomi3g00703 LST 34 822 Ion Channels gene family AT2G24720 29.938 2.78e-107 350.0
Lomi3g00746 . 56 932 Ion Channels gene family AT1G05200 65.798 0.0 1234.0
Lomi3g01041 LST 2 520 Ion Channels gene family AT4G22200 69.392 0.0 734.0
Lomi3g01042 LST 544 796 Ion Channels gene family AT4G22200 52.234 5.08e-89 280.0
Lomi3g01222 . 4 905 Ion Channels gene family AT4G35290 60.908 0.0 1132.0
Lomi3g02966 ACH 43 825 Ion Channels gene family AT3G07520 40.199 0.0 585.0
Lomi4g00164 . 44 405 Ion Channels gene family AT4G01840 56.098 1.13e-138 399.0
Lomi4g01756 . 556 685 Ion Channels gene family AT5G37500 29.63 1.86e-07 52.8
Lomi4g02152 . 5 901 Ion Channels gene family AT4G35290 61.846 0.0 1145.0
Lomi4g02309 LST 5 795 Ion Channels gene family AT4G22200 63.855 0.0 1058.0
Lomi4g02620 . 56 932 Ion Channels gene family AT1G05200 65.42 0.0 1231.0
Lomi4g02669 LST 8 842 Ion Channels gene family AT2G29110 30.046 3.19e-97 323.0
Lomi4g02845 . 47 872 Ion Channels gene family AT2G29120 46.382 0.0 750.0
Lomi4g02846 . 47 891 Ion Channels gene family AT2G29120 45.476 0.0 763.0
Lomi4g03045 ACH 7 856 Ion Channels gene family AT2G26650 68.213 0.0 1226.0
Lomi5g00188 . 39 730 Ion Channels gene family AT4G30560 64.903 0.0 953.0
Lomi5g01743 . 1 725 Ion Channels gene family AT2G24610 65.348 0.0 967.0
Lomi5g02024 ACH,LST 77 692 Ion Channels gene family AT5G54250 77.492 0.0 1001.0
Lomi5g02416 LST 15 726 Ion Channels gene family AT5G15410 70.499 0.0 986.0
Lomi5g02465 ACH,LST 11 779 Ion Channels gene family AT5G49890 77.243 0.0 1184.0
Lomi5g02559 LST 1 791 Ion Channels gene family AT5G26240 81.413 0.0 1244.0
Lomi5g02717 LST 381 772 Ion Channels gene family AT5G11210 34.264 6.21e-62 214.0
Lomi5g02718 LST 381 772 Ion Channels gene family AT5G11210 33.503 4.50e-61 212.0
Lomi5g02720 ACH,LST 435 839 Ion Channels gene family AT2G32400 32.452 1.68e-53 191.0
Lomi5g02753 ACH,LST 1 717 Ion Channels gene family AT5G57940 76.731 0.0 1123.0
Lomi6g00445 . 702 872 Ion Channels gene family AT2G29110 41.714 2.03e-39 142.0
Lomi6g00446 . 16 637 Ion Channels gene family AT2G29120 43.594 0.0 551.0
Lomi6g02463 . 29 704 Ion Channels gene family AT3G48010 61.799 0.0 867.0
Lomi7g00972 . 22 827 Ion Channels gene family AT3G02850 69.373 0.0 1203.0
Lomi7g01753 . 407 567 Ion Channels gene family AT4G22200 61.728 7.29e-59 194.0
Lomi7g02029 ACH 30 661 Ion Channels gene family AT4G32650 61.321 0.0 758.0
Lomi8g00026 LST 1 716 Ion Channels gene family AT5G53130 75.552 0.0 1114.0
Lomi8g00670 ACH,LST 50 638 Ion Channels gene family AT2G28260 53.559 0.0 699.0
Lomi8g00806 ACH,LST 1 678 Ion Channels gene family AT2G28260 68.803 0.0 1005.0
Lomi8g01146 . 3 888 Ion Channels gene family AT3G51480 58.764 0.0 1120.0
Lomi9g00807 LST 10 356 Ion Channels gene family AT5G40890 76.081 0.0 561.0
Lomi9g01130 . 23 898 Ion Channels gene family AT3G51480 61.512 0.0 1158.0
Lomi9g01488 . 42 816 Ion Channels gene family AT5G48410 37.909 1.42e-176 529.0
Lomi10g00037 LST 1 716 Ion Channels gene family AT5G53130 75.829 0.0 1119.0
Lomi10g00548 ACH,LST 30 637 Ion Channels gene family AT2G28260 52.053 0.0 704.0
Lomi10g00713 ACH,LST 1 678 Ion Channels gene family AT2G28260 68.234 0.0 995.0
Lomi10g00802 . 1 76 Ion Channels gene family AT5G40890 51.948 7.55e-23 88.6
Lomi10g00906 . 54 726 Ion Channels gene family AT5G15410 55.835 0.0 750.0
Lomi10g01221 . 630 767 Ion Channels gene family AT3G51480 65.942 3.90e-60 197.0
Lomi10g01222 . 776 888 Ion Channels gene family AT3G51480 46.903 2.40e-28 107.0
Lomi10g01321 . 16 824 Ion Channels gene family AT3G02850 65.971 0.0 1135.0
Lomi10g01810 . 7 431 Ion Channels gene family AT4G18160 57.942 6.65e-165 469.0
Lomi10g01902 . 83 713 Ion Channels gene family AT5G53130 57.367 0.0 746.0
Lomi10g01903 . 569 622 Ion Channels gene family AT4G30560 66.667 2.41e-18 76.6
Lomi11g01833 ACH 68 358 Ion Channels gene family AT5G55630 52.577 2.95e-104 309.0
Lomi11g01898 ACH,LST 77 692 Ion Channels gene family AT5G54250 77.346 0.0 995.0
Lomi11g02199 LST 15 726 Ion Channels gene family AT5G15410 70.222 0.0 985.0
Lomi11g02248 ACH,LST 1 779 Ion Channels gene family AT5G49890 76.252 0.0 1182.0
Lomi11g02332 LST 1 791 Ion Channels gene family AT5G26240 81.165 0.0 1240.0
Lomi11g02489 LST 677 793 Ion Channels gene family AT5G11180 39.831 3.39e-20 84.3
Lomi11g02491 . 494 873 Ion Channels gene family AT1G05200 30.311 2.30e-54 193.0
Lomi11g02492 ACH,LST 384 767 Ion Channels gene family AT5G11210 34.021 2.93e-58 201.0
Lomi11g02533 ACH,LST 1 717 Ion Channels gene family AT5G57940 76.454 0.0 1119.0
Lomi11g02575 ACH 522 713 Ion Channels gene family AT5G37500 31.122 7.09e-14 73.2
Lomi12g00722 . 58 352 Ion Channels gene family AT5G55630 53.378 9.91e-111 324.0
Lomi12g01232 LST 1 778 Ion Channels gene family AT3G27170 76.523 0.0 1226.0
Lomi13g00792 . 57 357 Ion Channels gene family AT5G55630 53.156 2.59e-119 346.0
Lomi13g01403 . 13 431 Ion Channels gene family AT4G18160 60.664 1.54e-172 488.0
Lomi14g00815 ACH 23 816 Ion Channels gene family AT5G48410 35.882 2.51e-158 481.0
Lomi14g00816 . 462 828 Ion Channels gene family AT3G07520 39.153 3.81e-81 266.0