AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00165 ATGCATATAACCGGACCTCATTCTTCATCTCTTCTACGACGAGCTTCTAGGTCTTCTTCTTCATCAGCGACCAGGTTTCACTCTTCTATTTCCAATAAATCAACGTCACCGGCTCCGTCTGCGTCTCCGGCACCGTTGTCACAGTTCCGATCTCATACTACTGCATCGGCGGCTTTCCGTACCGTACGATCTCGATGGAGTCACGGTGTTGATTGGAAGTCACCGGCTTCGTTGTCTTCTCAGATCAGGACTACTGCTTCTCCTGTGTTAGATCGTTTTCACCGTAGTCTTGCTACTAAAGCCTCTGAGAATGCTTTCAGTGGGATTTTGACGGGCCTTCCTAAGCCTGGAGGTGGAGAGTTTGGAAAGTTCTATAGTTTGCCTGCTCTGAATGATCCAAGAGTTGACAAGCTGCCATATTCAATTAGGATTCTTCTCGAATCAGCTATCCGTAATTGCGACAATTTCCAAGTCACAAAGGAAGATGTCGAGAAGATCATTGATTGGGAGAAGAGTGCACCACAGCAGGTTGAAATTCCATTCAAGCCGGCTCGTGTTCTCTTGCAGGATTTTACTGGTGTGCCTGCTGTGGTAGATCTTGCATGTATGCGTGATGCCATGAATAATCTTGGTGGCGACTCCAACAAAATTAATCCGTTGGTTCCCGTGGATCTTGTGATTGATCATTCTGTTCAAGTTGATGTTGCTAGATCTGAAAATGCAGTGAAAGCAAATATGGAACTTGAATTTCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAGTGGGGATCCAAAGCTTTCCAAAACATGCTTGTTGTTCCACCAGGATCTGGTATCGTGCATCAGGTTAACCTTGAATATCTTGGAAGAGTTGTTTTCAACACTGATGGAATGCTATACCCTGATAGTGTTGTTGGGACGGATTCCCACACTACTATGATTGACGGGTTAGGTGTTGCTGGTTGGGGAGTTGGAGGAATCGAAGCAGAGGCCACAATGCTTGGGCAGCCAATGAGCATGGTTTTGCCTGGTGTTGTCGGGTTCAAGTTATCAGGGAAACTGCGCAATGGTGTAACAGCTACTGATTTGGTTTTGACTGTCACCCAAATGTTAAGGAAGCACGGTGTTGTTGGGAAATTTGTTGAATTCCATGGGGATGGTGTGGGTAAAATATCACTTGCAGACAGGGCTACTATAGCCAACATGTCTCCTGAGTATGGTGCAACAATGGGCTTCTTCCCGGTTGATCATGTTACTCTTCAGTATCTCAAGTTAACTGGTCGAAGTGATGATACGGTTGCTATGATAGAAGCATACTTACGTGCAAACAATATGTTTGTCGACTATAATGAGCCACAACAAGAAAGAGTCTACTCATCTTATTTGAACCTAGACCTTTCAGAAGTAGAACCCTGTATTTCAGGGCCAAAGAGACCTCATGACCGGGTCCCTCTGAGAGACATGAAAGCAGATTGGCATTCTTGCCTTGATAATAAAGTGGGATTCAAGGGCTTCGCAGTACCAAAAGATGCACAAGACAAAGTAGCAAAGTTTGATTTTCATGGACAGCCAGCAGAACTAAGGCATGGCAGTGTTGTGATTGCTGCTATCACAAGTTGCACAAATACATCCAACCCTAGTGTTATGCTCGGGGCAGGTCTTGTTGCCAAAAAGGCCTGTGAATTGGGTCTACAGGTCAAACCATGGGTTAAAACCAGTCTTGCTCCTGGATCTGGAGTTGTTACAAAGTATTTGCTTCAAAGTGGGTTGCAGAAGTATTTGAATGAGCAAGGGTTTAACATTGTTGGATATGGCTGCACGACATGCATTGGCAATTCCGGGGAGTTGGATGAATCTGTTGGTGCTGCGATAGCTGATAATGATATCATTGCATCAGCTGTTCTATCTGGGAACCGAAACTTTGAGGGGCGTGTTCATGCATTGACAAGAGCAAACTATCTTGCATCGCCTCCTTTGGTTGTTGCCTATGCCCTTGCTGGCACGGTTGATATTGATTTTGAGAAAGAACCGATTGGGGTTGGAAAAGATGGAAAGAGCGTTTATTTCAGGGATATCTGGCCCTCTACTGAAGAAATTGCCGAGGCTGTTCAATCAAGTGTTCTGCCTGAGATGTTTAAGAGTACTTATAAATCTATCACTGAAGGAAATCCCATGTGGAATGATCTATCAGTCCCAGAGTCCCAGCGATACACATGGGATTCAAACTCTACATACATTCATGAGCCACCATATTTCAGAAATATGACAATGGACCCCCCTGGGGCCCATGGTGTGAAGGACGCGTATTGCTTGCTCAACTTCGGCGACAGTATCACAACCGATCACATTTCCCCGGCAGGAAGTATTCACAAGGACAGCCCAGCTGCGAAGTTTCTTCTTGAACGTGGTGTTGACCGCAAAGATTTCAATTCTTATGGCAGTCGACGAGGTAATGATGAAGTTATGGCCAGGGGTACTTTTGCCAATATCCGCATTGTCAACAAGCTTTTAAAGGGGGAAGTTGGCCCAAAGACGGTACATATCCCTACAGGAGAGAAACTCTCCGTGTTTGATGCAGCATCAAGGTACAAGACTGCTGGTCAGGATACAATCGTGTTGGCTGGAGCAGAGTATGGAAGTGGAAGTTCCAGAGATTGGGCTGCCAAGGGGCCTATGTTATTGGGGGTTAAAGCGGTGATTGCGAAAAGTTTTGAGAGGATCCATCGCAGTAACTTGGTAGGTATGGGAATTATACCACTTTGTTTTAAAGCTGGTGAAGATGCGGATACACTACAGTTGACTGGTCATGAACGATATACCATCGACCTTCCAAGCAACATCAGTGAGATTCGACCTGGCCAGGATGTCACTGTCAAAACCGACACTGGAAAATCATTCACGTGTGTTGCCCGATTTGACACTGAGGTGGAATTGGCGTATTTCAATCATGGTGGCATTCTTCCTTATGTTATCCGACAACTATTGGCACAAAAATGA 2997 45.18 MHITGPHSSSLLRRASRSSSSSATRFHSSISNKSTSPAPSASPAPLSQFRSHTTASAAFRTVRSRWSHGVDWKSPASLSSQIRTTASPVLDRFHRSLATKASENAFSGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKSAPQQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVKANMELEFQRNKERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVDYNEPQQERVYSSYLNLDLSEVEPCISGPKRPHDRVPLRDMKADWHSCLDNKVGFKGFAVPKDAQDKVAKFDFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGYGCTTCIGNSGELDESVGAAIADNDIIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPIGVGKDGKSVYFRDIWPSTEEIAEAVQSSVLPEMFKSTYKSITEGNPMWNDLSVPESQRYTWDSNSTYIHEPPYFRNMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAASRYKTAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLQLTGHERYTIDLPSNISEIRPGQDVTVKTDTGKSFTCVARFDTEVELAYFNHGGILPYVIRQLLAQK 998
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00165 998 SUPERFAMILY Aconitase iron-sulfur domain 118 732 IPR036008 -
Lomi1g00165 998 PRINTS Aconitase family signature 375 388 IPR001030 -
Lomi1g00165 998 PRINTS Aconitase family signature 471 485 IPR001030 -
Lomi1g00165 998 PRINTS Aconitase family signature 536 547 IPR001030 -
Lomi1g00165 998 PRINTS Aconitase family signature 313 328 IPR001030 -
Lomi1g00165 998 PRINTS Aconitase family signature 598 611 IPR001030 -
Lomi1g00165 998 PRINTS Aconitase family signature 246 259 IPR001030 -
Lomi1g00165 998 PRINTS Aconitase family signature 389 402 IPR001030 -
Lomi1g00165 998 PRINTS Aconitase family signature 270 278 IPR001030 -
Lomi1g00165 998 PRINTS Aconitase family signature 299 312 IPR001030 -
Lomi1g00165 998 CDD AcnA-IRP 185 669 - -
Lomi1g00165 998 Pfam Aconitase C-terminal domain 796 924 IPR000573 -
Lomi1g00165 998 FunFam Aconitate hydratase 759 996 - -
Lomi1g00165 998 ProSitePatterns Aconitase family signature 1. 532 548 IPR018136 -
Lomi1g00165 998 Gene3D Aconitase, domain 3 104 471 IPR015931 -
Lomi1g00165 998 FunFam Aconitate hydratase 104 471 - -
Lomi1g00165 998 FunFam cytoplasmic aconitate hydratase 472 695 - -
Lomi1g00165 998 SUPERFAMILY LeuD-IlvD-like 736 995 - -
Lomi1g00165 998 MobiDBLite consensus disorder prediction 1 49 - -
Lomi1g00165 998 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 102 995 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
Lomi1g00165 998 Gene3D Aconitase, domain 3 472 695 IPR015931 -
Lomi1g00165 998 Gene3D Aconitase, domain 4 760 996 IPR015928 -
Lomi1g00165 998 Gene3D - 696 757 - -
Lomi1g00165 998 CDD AcnA-IRP-Swivel 773 943 IPR044137 -
Lomi1g00165 998 NCBIfam aconitate hydratase AcnA 122 995 IPR006249 -
Lomi1g00165 998 ProSitePatterns Aconitase family signature 2. 598 611 IPR018136 -
Lomi1g00165 998 Pfam Aconitase family (aconitate hydratase) 164 667 IPR001030 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00165 K01681 aconitate hydratase [EC:4.2.1.3]
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Event-related genes

Select Gene_1 Gene_2 Event_name
118771 Lomi11g02003 Lomi1g00165
121158 Lomi1g00165 Lomi5g02214
324002 Lomi2g04501 Lomi1g00165
333475 Lomi1g00165 Lomi2g04501
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1462543 Lomi11g02003 Lomi-Chr11:28553431 wgd
Lomi Lomi-Chr1:1462543 Lomi2g04501 Lomi-Chr2:50066553 wgd
Lomi Lomi-Chr1:1462543 Lomi5g02214 Lomi-Chr5:32543041 wgd
Lomi Lomi-Chr1:1462543 Lomi5g01978 Lomi-Chr5:30901523 wgd