AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00179 ATGGACTTTGATGCACCAACGGATCTAATCAATAAATCGCAGATCGGATTCAGACTACTCGCCGGACTATCATCATTCAACCCTAACGACACCACTCTACCGTCTCTTCCCACCGTTGTGGCATCTATCTCCGCCGTAGACCCATCGCCGTCGAACCTGAGATGCAAATTCTGTAAAGGAAAGCTTTTGAGAGACTTACAGTCACTGATTTGTATTTACTGTGGTGAATTCCAGAAGAATGATGTTCATCCTGATCCTATTGCTTTCAGTTCCACCATTGGCTATAGCTGGTTACTTCAATCATTGAACTTTAATGGATCAGAAAGAGTTGGGTCGTTGGCTGAAGGAATCGGTCTAAATGGAGCGCAGAGCCCTGCAGAAGATGAAGCAACTTTGTCTGAGCTCCTAGATTTGAAGATTACATGGCGGGACCTGCCTAAAAGATCCAGGAATCTCAAGACCTCTGAACGTAACAGTTCTTTGAATCTGGATACAGCCGATGTGGATGATTTCTTTATAGAGTCAAAGAGGAATATTGTGTCTGATGTACGTGAAGAACTACCAGTTGCCAACAAAATTGAACAGAATAAGGCCTTTGAGGTTCAAGAGAATCATAATGTTTTGCCATCTGAGACACCTGTCACTTCCCCAATTGATGTGGGTGATGCTTCATCTGATTGGAATGCAGAATTTCAATTTCCAGATACCAAAATGGAGAATGAGATTCCCAAATCAGCTGAGCCTTTTGTAGGTTCCAAAGCTGATATGTCTTTCCAAACGGATTCAATTTCTGGCCAGAAGGAAAGCTTCGGTAACAAAAAACTGAATGATGATTCAGATTTGTTTCAAGATAACCTTTTTGCCAACATGAGCTCTCCAACTTTTCAGCAGGCTGAGAAATTGGAATCAGTCGCTAAAGCAGATGCTGGGTTATCGGGTCATGTAAATGATCTTAATTCAACAGATGCAGATGAAGACTGGTTTGGTGATGGTAATTGGCAGAAAAGTGTTGTTAACAATAGTACCATCTCTCAGCAGGCTGATCAGTTAGATTTGTTTGACAATGTAAATGATGAATCTTCTCGCGATAATCAAAATGATTCATCAACAGATTGGTTTGAAAGTACTAACTGGCAGAAAAGTGGTGTCGAAAACATTGCTTCGATGCAGGCTGATCAGTTAGACTTGTTTGACAAAGTAAATGATGGATCTTCACAGGATAATCAAAGAGATTCAACTACAGATTGGTTTGGGAATAGTGACTGGCAGAAAAGTGGTGCCGAAAACACTGCTGTCTCTCAGCAGGTTGATCAGTTAGACTTGTTTGACAAAGTAAATGATGTGTCTTCACAGGACAATCAAAATGATTCATCTACAGATTGGTTTGGAAATAGTAGCTTCCATAAAAGTACTGCTAACAACACAGCAACCATTAAGAATGATAATTTATTTGATAGTAAACCGCAGATTGATCCAATCTCTTCATCATCATTGGTTAATGACTTAATGGAGTCTGAAAAATCAGATCTTGATAATTCAGAGTCTACTGACTGGTTTCAAAATAGTCAATGGCCAATTGGTGATTCTACTTCCACCAATATTGTGGCCAGCAAAGATGATGATGACGATGTTGGGTTTGATGAATGGAATGATTTCACAAGCTCAACTGATAATTCTTGGAAACAAAGTAATGAGAATAATGCTGCTGGCGAAAAGACGTCGGAATCATATTTGTTCCCCTCAACAGCTGATCCACAGGAAGTCAATTTTGGCAACTTCTTCCAGTCAGATCCATTTTCTAGTTCATCTAGTAATAAAGATTCAAAAGATACTCATGCTGTGTATGATATCTTTTCAGAAGTATCTACAACAAGCAGGAATGCCAATGCTGAAGCTGGAAATAGTGCTGATGGACCAAAGAATGATGAAATTACTCTCAATGCAACTACAAGTCCGAAGAATGATGTACAAATGCTGTTGTCACAGATGCATGACCTGTCTTTCATGCTCAAGAGCGAGCTTTCAATTCCCCCAAAGCCAAATGATATTGGCCCTTCTCACAGGTAA 2067 40.01 MDFDAPTDLINKSQIGFRLLAGLSSFNPNDTTLPSLPTVVASISAVDPSPSNLRCKFCKGKLLRDLQSLICIYCGEFQKNDVHPDPIAFSSTIGYSWLLQSLNFNGSERVGSLAEGIGLNGAQSPAEDEATLSELLDLKITWRDLPKRSRNLKTSERNSSLNLDTADVDDFFIESKRNIVSDVREELPVANKIEQNKAFEVQENHNVLPSETPVTSPIDVGDASSDWNAEFQFPDTKMENEIPKSAEPFVGSKADMSFQTDSISGQKESFGNKKLNDDSDLFQDNLFANMSSPTFQQAEKLESVAKADAGLSGHVNDLNSTDADEDWFGDGNWQKSVVNNSTISQQADQLDLFDNVNDESSRDNQNDSSTDWFESTNWQKSGVENIASMQADQLDLFDKVNDGSSQDNQRDSTTDWFGNSDWQKSGAENTAVSQQVDQLDLFDKVNDVSSQDNQNDSSTDWFGNSSFHKSTANNTATIKNDNLFDSKPQIDPISSSSLVNDLMESEKSDLDNSESTDWFQNSQWPIGDSTSTNIVASKDDDDDVGFDEWNDFTSSTDNSWKQSNENNAAGEKTSESYLFPSTADPQEVNFGNFFQSDPFSSSSSNKDSKDTHAVYDIFSEVSTTSRNANAEAGNSADGPKNDEITLNATTSPKNDVQMLLSQMHDLSFMLKSELSIPPKPNDIGPSHR 688
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00179 688 PANTHER DENTIN SIALOPHOSPHOPROTEIN-RELATED 505 682 - -
Lomi1g00179 688 MobiDBLite consensus disorder prediction 514 534 - -
Lomi1g00179 688 MobiDBLite consensus disorder prediction 549 573 - -
Lomi1g00179 688 MobiDBLite consensus disorder prediction 625 650 - -
Lomi1g00179 688 MobiDBLite consensus disorder prediction 399 429 - -
Lomi1g00179 688 MobiDBLite consensus disorder prediction 504 573 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00179 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
121164 Lomi1g00179 Lomi5g02199
324010 Lomi2g04488 Lomi1g00179
333467 Lomi1g00179 Lomi2g04488
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1608315 Lomi2g04488 Lomi-Chr2:49945431 wgd
Lomi Lomi-Chr1:1608315 Lomi5g02199 Lomi-Chr5:32447959 wgd