AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00183 ATGACAGCAAAAAGGAGATTTCTACCTATTACTTCACGACGTCAAATTCCGCCATTAGTTTCAATATTTTTAAAAGTATTTTTAATCTTATTTTGTTTCGTTATTGCTTTCGGACTGTTTTCTCAATTTAAACTTCAATCGTCATCTATTTCTACTGAATTTGGATTTAATGAGTTCCTTATGGATAATTATCGTATGAAGATTGCTTTCCTGTTTCTCGTTCGTGATAATATTCCTCTTGATTTCCTCTGGCACAATTTCTTCAAGAATGCAGATCCTGAAAATTTCACAATATACATACACTCGAAGCCTGGTTTTGTGTTCGACGAGTCAGTTACTAGATCAGTCTACTTCCACAATCGACAGTTGGAAAACAGTGTTGAGGTGGGATGGGGTAAGCCGACTATGATTGAAGCTGAGAAGCTGTTATTTAAGGCAGCCCTTGATGATATAAGCAATCAGATTTTCGTTCTCCTATCAGACAGTTGTGTTCCTCTATATGATTTCAGTTACATATACACATATCTCATATCATCTCCAAGAAGCTTTGTGGACAGCTTTATTGATGCAACAGAAAAACGCTATAATCCAGAGATGTCCCCTGACATACCTGAAGACAAATGGCGGAAAGGATCCCAGTGGATCACATTGGTCAGAAGGCATGCAGAGGTGGTTGCATATGATCATGTTATTTTCCCGATCTTCAACAAACATTGCAAGCGACGGCCGCTTCTAGACTTGAGCAAGGGAAATGAGTCTCTTAAAGAGCAGCAGCAACACAATTGTATCCCAGATGAGCATTATGTGCCCACCTTACTTGCAATGCGCGACTTTGAAGAAGAATTAGAGCGAAGAACGTTGACTTATTCTTTATGGAACCAGTCTACTGAAACGATGAATACACAAGCCTGGCACCCTGTAACATTCAGGTATGCAACTGCCAGCCAGAAAAATATTCAAGATATCAAGGATATTGACCATATTTATTTCAAATATGAGAACCGGACAGAATGGTGTGGTACTAAATCTAATAGCAGTCCTTGTTACTTATTTGCCAGGAAGTTCTCGCGTGGTGCAGCTATGCGCCTTTTGACTAATGGGGTGGTTGGTCCATATGATCCCAACACATTGTTCTTAGACCGGACATAG 1149 39.6 MTAKRRFLPITSRRQIPPLVSIFLKVFLILFCFVIAFGLFSQFKLQSSSISTEFGFNEFLMDNYRMKIAFLFLVRDNIPLDFLWHNFFKNADPENFTIYIHSKPGFVFDESVTRSVYFHNRQLENSVEVGWGKPTMIEAEKLLFKAALDDISNQIFVLLSDSCVPLYDFSYIYTYLISSPRSFVDSFIDATEKRYNPEMSPDIPEDKWRKGSQWITLVRRHAEVVAYDHVIFPIFNKHCKRRPLLDLSKGNESLKEQQQHNCIPDEHYVPTLLAMRDFEEELERRTLTYSLWNQSTETMNTQAWHPVTFRYATASQKNIQDIKDIDHIYFKYENRTEWCGTKSNSSPCYLFARKFSRGAAMRLLTNGVVGPYDPNTLFLDRT 382
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00183 382 Pfam Core-2-I-Branching enzyme 68 322 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
Lomi1g00183 382 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 37 364 IPR044174 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00183 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1641477 Lomi6g00684 Lomi-Chr6:7903045 dispersed
Lomi Lomi-Chr1:1641477 Lomi2g04485 Lomi-Chr2:49926852 wgd
Lomi Lomi-Chr1:1641477 Lomi2g01825 Lomi-Chr2:16928448 wgd