Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi1g00186	ATGGATTTTGAGTTACGAAGAGCGAGAGAGAAATTGGAAAAAGAACAAAAAGATAGAAAAGAGAAAGCGAGATTAAGAACAGAAAGAGAAAGGAAAGCTAAACAAGAAGCTATACGTCAACGTGAAGCCATTGAAGCTGCTCAAAGATCTCGCAGAATCGATGCTATGGAAGCGCAACTTAAGGCGGATCAGCAGATGGAAGAAAGTATATTTGCTGGGAGAGGAGTTTCTTTTAACCGTATTTTAGAAGCTATGCCATTTGAGGGTTCTGGAGATAAGATCAAACTACCGCCTTCCTGTTTTAACGATTTATCCAGTGAAGGTGCTTTCGACAAAGGTCCCCTTCATTTCCAGTTGTCAGTAGTTCAACAAAACGAGTCGTCACAATCACAGCCTGCTGAAAGTGTAGACCACGGGTCAACCCACGCAGGGGTCTTGGAGTTCACAGCGGAAGAAGGTTCTGTTGGGATCCCTCCTCACATTTGGAATAACTTATACTCTAAACAAGATCCAATGACGCCTTTGATTGAAGTTAAATACGTGTGGCTAGCAAAGGGAACATACGCAAAGCTTCAATCAGAAGAACTCGGGTTCTCAGATATACCCAACCACAAAGCTGTTCTTGAAACAACCCTTCGTCAGCATGCAACTCTTTCTCAAGACGATGTTTTGACTGTCAAACACGGGGTGTTGACTTATCATCTCCGCGTGCTTGAGTTAAAACCGTCGTCAAGTGTATCTGTCCTTGAAACTGATATTGAAGTCGACATCATGGGTCCCGATTCACTTCCTGAGAAAAGCAACCAGCATGTACTGAAACCAATAACTTTTGGGAAGTCAGAATCTGGTGTTATTAATGAAGGTGAATACGTTTATTACAAATTTCCAGTAGATGATGGCACATGGGGTAGAATTATATCAGGGGATGCTGAAATTGAAGTGAAGCTGGATTCAGAGGCTAAAGATGGAGATACCGATCTTTATCTTTCAAGACACCCGCTCTTGTTCCCAAACACGCACCAACATGGTTGGTCTAGCCATGATGTGGGTTCAAAGTGTTTGGTTCTTGGCTCGAAAGACCACAGTTTGGGTACTGGTACCTACAGTGTCGGTGTATATGGCTTCAAGGGAACCACAAAATACCATATTTCTGTAACCATTCAAGAAACTTCTAACTCAAAGGTTGGTCAACAACCCGTGTCATCTTCTTCATCGACAGCAGATACTGTAGAGTGTAGCAACTGCAAACATTACATACCCTTTAGAACGATAGCACTTCATGAGGCCTATTGTAGAAGACACAATGTGATCTGTCAACATGCAGGTTGCGGTATTGTCCTTAGGACCGAAGAGGTTAAGAACCATGTGCACTGCGAGAAATGTGGACTGGCTTTTCATAGTGGGGAGATAGACAAACATATGAAAGTGTTTCACGAGCCGCTATGCTGTCCATGCGGGGTCGTCCTTGAGAAGATACAGATGGTGCAACACCAGTCTTCAGAATGTGCCTTGCGTCTTGTGACATGTCGATTTTGTGGGGATATGGTCCAAGCTGGTTCGTTGGCTGCTGATACACGAGATCGGTTGAGAGGATTATCCGAGCATGAGAGTCTTTGTGGGTCCAGAACTGCCCCATGTGACTCGTGTGGTCGGTCAGTAATGTTGAAAGAAATGGAAATTCATCAAGTAGCTGTTCATCAGAAAAATTGA	1710	43.63	MDFELRRAREKLEKEQKDRKEKARLRTERERKAKQEAIRQREAIEAAQRSRRIDAMEAQLKADQQMEESIFAGRGVSFNRILEAMPFEGSGDKIKLPPSCFNDLSSEGAFDKGPLHFQLSVVQQNESSQSQPAESVDHGSTHAGVLEFTAEEGSVGIPPHIWNNLYSKQDPMTPLIEVKYVWLAKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSQDDVLTVKHGVLTYHLRVLELKPSSSVSVLETDIEVDIMGPDSLPEKSNQHVLKPITFGKSESGVINEGEYVYYKFPVDDGTWGRIISGDAEIEVKLDSEAKDGDTDLYLSRHPLLFPNTHQHGWSSHDVGSKCLVLGSKDHSLGTGTYSVGVYGFKGTTKYHISVTIQETSNSKVGQQPVSSSSSTADTVECSNCKHYIPFRTIALHEAYCRRHNVICQHAGCGIVLRTEEVKNHVHCEKCGLAFHSGEIDKHMKVFHEPLCCPCGVVLEKIQMVQHQSSECALRLVTCRFCGDMVQAGSLAADTRDRLRGLSEHESLCGSRTAPCDSCGRSVMLKEMEIHQVAVHQKN	569

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi1g00186	569	CDD	UDM1-RNF168-RNF169-like	4	65	-	-
	Lomi1g00186	569	Gene3D	-	185	258	-	-
	Lomi1g00186	569	Coils	Coil	30	50	-	-
	Lomi1g00186	569	Gene3D	-	279	393	-	-
	Lomi1g00186	569	Gene3D	Zinc-RING finger domain, C3HC4 (zinc finger)	499	567	IPR013083	-
	Lomi1g00186	569	PANTHER	UBIQUITIN FUSION DEGRADATON PROTEIN 1	1	541	IPR004854	GO:0006511(InterPro)\|GO:0030433(PANTHER)\|GO:0031593(PANTHER)\|GO:0034098(PANTHER)\|GO:0071712(PANTHER)
	Lomi1g00186	569	Gene3D	-	74	183	IPR042299	-
	Lomi1g00186	569	MobiDBLite	consensus disorder prediction	1	39	-	-
	Lomi1g00186	569	Coils	Coil	5	25	-	-
	Lomi1g00186	569	Pfam	TRAFD1-XAF1, zinc finger	532	561	IPR049439	-
	Lomi1g00186	569	Pfam	Ubiquitin fusion degradation protein UFD1	90	260	IPR004854	GO:0006511(InterPro)
	Lomi1g00186	569	SUPERFAMILY	TRAF domain-like	410	459	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi1g00186	K14016	ubiquitin fusion degradation protein 1

Event-related genes

Select	Gene_1	Gene_2	Event_name
	324014	Lomi2g04483	Lomi1g00186
	333463	Lomi1g00186	Lomi2g04483

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:1661268	Lomi2g04483	Lomi-Chr2:49906879	wgd