AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00191 ATGGAAGAAGATACACCGGCAACAAACACAAACAACCCTCACCTTGAATTGATCACGGCATTTTCAGAAATCACTTCCGCTTCAAAAGAAGAAGCCACTTTTTTCCTCGAATCACACAATTACGATCTCGATTCCGCCGTTTCCACCTTTTTCGAAACCACCACCGTTGCCGCCGGAGAACAAGCTCCGGTACCTCACCGGAACCCTACCCGTTCTGATGATATCGAAATATCTCCTTCTTCGTCTCCATCTCGTTCCCGATCAGCTTCTCCTCCGCCGTCGCTAGGGTTACAACAATTAGTCGGTGGAAATCCGTATAATTTGCGATCGAGAAATACTGGTGCTGATAAGAAGGCGTCTGGTAGTCGGTCAACGAGGTCAACTGGACGGACACGGACGTTTTCCGATCTGAATCAACCTGGTGATGAATCAGGAAGTGATTCGGATGAACCTAATGAGTATTACACTGGTGGTGAAAAAAGTGGAATGTTCGTGCAGGATCCAACAAGGGTGAATGATGTGGAATCTCTGTTTAACCAAGCTAGACAAGCAGGGGCGGAAGAAGGAACTCTTGATCAACTTCAGCCATCTTCAAGCTCAAGAAGCTTTGCTGGAAGAGGAAGACTACTGTCTGGAGAGACAACACCTGCTGCTCCCCAACAAGCTGAACCTGAGGTTAACACACATACCATCACTTTCTGGACCAATGGCTTCACAGTAAATGATGGTCCTTTGAGGAGGCTGGATGATCCTCAAAATGCATCTTTTTTGGAGAGCATAAGGAAGTCTGAGTGTCCAGAAGAACTTAAGCCTGCTAAAGGAAGAGCTCCTGTCCATGTTAGTCTTGTGAGGAAGCTGGAGGAATATCCTGTCCAGAAACACCGTCCTGCTGCCTTTGTGGGAGTGGGTAGAACCTTAGGCACTACTACCTCTTCAGAGGACACCATAGTTGCCCCTTTGGCCCCTGCAAATGCTGCCCCAACCCCATCTATGGGCCTAGTTGTGGACGACACATTACCATCTACTTCTATTCAATTGAGATTGGCTGATGGAACCCGTATGGTTTCACGCTTCAATTTCCACCACACAATAAGCAATATCCGTTCTTTCATTGATGCATCAAGGCCTGGAGGGACCAGGGCTTATCAGCTACTAACTATGGGATTCCCTCCAAAGCAGCTCAGCGATTTGAACCAGACAATTGAAGAGGCTGGGTTAGCCAATTCGGTTGTAATCCAGAAACTCTAA 1248 47.36 MEEDTPATNTNNPHLELITAFSEITSASKEEATFFLESHNYDLDSAVSTFFETTTVAAGEQAPVPHRNPTRSDDIEISPSSSPSRSRSASPPPSLGLQQLVGGNPYNLRSRNTGADKKASGSRSTRSTGRTRTFSDLNQPGDESGSDSDEPNEYYTGGEKSGMFVQDPTRVNDVESLFNQARQAGAEEGTLDQLQPSSSSRSFAGRGRLLSGETTPAAPQQAEPEVNTHTITFWTNGFTVNDGPLRRLDDPQNASFLESIRKSECPEELKPAKGRAPVHVSLVRKLEEYPVQKHRPAAFVGVGRTLGTTTSSEDTIVAPLAPANAAPTPSMGLVVDDTLPSTSIQLRLADGTRMVSRFNFHHTISNIRSFIDASRPGGTRAYQLLTMGFPPKQLSDLNQTIEEAGLANSVVIQKL 415
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00191 415 CDD UBX-UBXN2 343 414 - -
Lomi1g00191 415 ProSiteProfiles UBX domain profile. 337 414 IPR001012 GO:0005515(InterPro)
Lomi1g00191 415 FunFam Plant UBX domain-containing protein 4 226 288 - -
Lomi1g00191 415 Pfam SEP domain 231 304 IPR012989 -
Lomi1g00191 415 MobiDBLite consensus disorder prediction 58 165 - -
Lomi1g00191 415 MobiDBLite consensus disorder prediction 190 205 - -
Lomi1g00191 415 Gene3D SEP domain 226 288 IPR036241 -
Lomi1g00191 415 CDD UBA-CF106 14 52 IPR039517 -
Lomi1g00191 415 ProSiteProfiles SEP domain profile. 226 291 IPR012989 -
Lomi1g00191 415 SMART ubx-3 336 415 IPR001012 GO:0005515(InterPro)
Lomi1g00191 415 PANTHER UBX DOMAIN CONTAINING PROTEIN 16 414 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Lomi1g00191 415 Pfam UBX domain 340 414 IPR001012 GO:0005515(InterPro)
Lomi1g00191 415 SUPERFAMILY Ubiquitin-like 299 413 IPR029071 -
Lomi1g00191 415 Gene3D - 291 415 - -
Lomi1g00191 415 MobiDBLite consensus disorder prediction 74 145 - -
Lomi1g00191 415 SUPERFAMILY UBA-like 14 52 IPR009060 GO:0005515(InterPro)
Lomi1g00191 415 MobiDBLite consensus disorder prediction 185 225 - -
Lomi1g00191 415 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 222 311 IPR036241 -
Lomi1g00191 415 Gene3D - 13 53 - -
Lomi1g00191 415 FunFam Plant UBX domain-containing protein 4 291 415 - -
Lomi1g00191 415 Pfam UBA-like domain 16 53 - -
Lomi1g00191 415 SMART faf-3 223 316 IPR012989 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00191 K14012 UBX domain-containing protein 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
324019 Lomi2g04478 Lomi1g00191
333458 Lomi1g00191 Lomi2g04478
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1697888 Lomi1g02536 Lomi-Chr1:37464914 dispersed
Lomi Lomi-Chr1:1697888 Lomi2g04478 Lomi-Chr2:49861069 wgd
Lomi Lomi-Chr1:1697888 Lomi2g01820 Lomi-Chr2:16843919 wgd