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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00192 ATGAATGCTTACAAGGCATACAAAGCGTGTGTCCCAGTAGCATGGAGTCCAAACTTATACATAACGTTAGTTAGAGGAATACCAGGAACCAGGAGACTTCACAGGCGAACTCTCGAAGCGTTACGTTTAGGAAAGTGTAATCGAACTGTAATGCGATGGAATACTCCTACTGTTAGAGGAATGCTTCAGCAGGTCAAAAGATTGGTTGTAATTGAAACTGAAGAAATGTTTAAGGCACGTAAAGAAAAGGAATTAAAGCATCGTGCAATCCGTCCACCTTTGGTTGTCAGCCATCTTCCTCCTCCAGCAAGCGATTCTTCTCAACAAGCTGCCTAA 336 42.86 MNAYKAYKACVPVAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMFKARKEKELKHRAIRPPLVVSHLPPPASDSSQQAA 111
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00192 111 Hamap Large ribosomal subunit protein uL30 [rpmD]. 16 73 IPR005996 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015934(InterPro)
Lomi1g00192 111 Pfam Ribosomal protein L30p-L7e 20 69 IPR016082 -
Lomi1g00192 111 Gene3D - 17 78 IPR036919 -
Lomi1g00192 111 FunFam 50S ribosomal protein L30 17 98 - -
Lomi1g00192 111 SUPERFAMILY Ribosomal protein L30p-L7e 18 72 IPR036919 -
Lomi1g00192 111 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L30 1 107 IPR005996 GO:0003735(InterPro)|GO:0005739(PANTHER)|GO:0006412(InterPro)|GO:0015934(InterPro)
Lomi1g00192 111 CDD Ribosomal-L30 19 72 IPR005996 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015934(InterPro)
Lomi1g00192 111 NCBIfam 50S ribosomal protein L30 19 72 IPR005996 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015934(InterPro)
Lomi1g00192 111 MobiDBLite consensus disorder prediction 89 111 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00192 K02907 large subunit ribosomal protein L30
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Event-related genes

Select Gene_1 Gene_2 Event_name
324020 Lomi2g04477 Lomi1g00192
333457 Lomi1g00192 Lomi2g04477
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1705292 Lomi2g04477 Lomi-Chr2:49857252 wgd