AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00199 ATGACGAGATACTTTTATCCATTAACCAGTTTCCAAATTGGAGATTTGCAGTCTTATCTTTCGGATCTCAGTCTTTACTTGGCACCTGACAGTAAGGACTTTTATGTATTAGTGGATAATAGGCCATGGTTGGAAGATTTGGCCTCACGGCCTGCGCACTTATGGCAGCTTATGGTTACCAAGTCAAGAATGTCTCCTTTTGCGAACACAAGAGGGAGGAAGGGGAAGAAAGAGAGCACGGAATTTGTTGACAAAAAGGTTCATTCTAAAGGTTCAAGCCAGCCCCGAAACTTGAAAAAATGGTTTTCAGTGGTAGATGCTGCAACATTGTCAAAAAAGCAGGCCATGCTTCCTGTAAAGAAACTCAGGAGTTCATTGCTTGCGAATAGCAAATTGCATAGAACATTATATGGGTTTATCGTCTTTAAAGTGGGGTGGCAAGATGTTCGTGGTATAAATTACTTGAATGAGCTTCAGACTGATACTTCTCTTGCAATAGAGGCTAAATACATGAAAAGATGGGAGTTTGATAGCATATCTCAAGCAGCTAAATGTATAGATACATGGTTTCCAGGGACAGAACGTGAACGACATCTCTTAGAAGAGCATCTCGACTATATGCTAGGAGAGGTGTTCTATGATGCTCCTAAAGAATTTCCAGACTGTCATAGTACAAATCATGATGAAACAATCTCGAATGCTAGTGCACGGCAGGAGAATGAATCTCCCTACACTCCTCGTTGCAATCTTGGTGAAAAGATTGAAACTTTAGAAGACGAAACAAGTATATTGCATACTCCTCCTCCTAATGGGCCCTATAAGAGAAGAAAATTAATGAGTCCAGTAGGATTTAATCTCGAGACCAATTATTATAGTGAGTTATCACATGGTGGAAGTGTTTGCACACCAGTGGCGTCCTTTTATGCAAGTGATTGTGAGGGAACAGCTGAACCCACCGAGTACAAGGATGTGTTACTTTTGTTTCGGTTCAATGACCATGACCTCCCGTTTGAATTACAAGAAATAATAGTCTCTGATTTGCGATTACTTACTCTATTAGAGGCTGGACTTCCATCATGGGTGATTTTCTGTCAATCATATCCTGTTTTTTCTCATATTTATCGCCCGTGGATGTGCCCTCTAGCAAGAGCTTTGTATGTGGTTATTTCCATTGTTACGGTTGTCATTGGTTTCTACGATCTGTACAAAAACGTTCCCGTTCTGAAGGCAACTGCTTCCCGTTTATGTGGGCCGCTTTTTGATTGGATAGAAACATGGGAGATGGTATCGAGGATCAAGTATTTGGGAACTATGTTGTTTTTGCATAATTCTGAGAAAGCGATTATGTGGTTCTTGATGATGACACGCACTGTTCGATCATTTGTTTCTATTATCACACAGCCGTTAGCCGGACCATTTCTGGATTTTCTCGAGGTTCTCCTTCCTGTTTGGAATTTATTTGTTGAGGCAGGACAATATTTCTTCTCGTTCATTTGGATTCTGATGGAAACTTCTTGGGACCTAGTCGAGAATGTAGTTGAAGTCGTGCTTGTTCCCATCGGGTTAATCTTGTCAGTTATTTGGAAAATTGTGTCGACTGTTATGTACCCTATTTTCTGGAGCCTTTGGGGAATACTGTATGCTCCAATAGGTCTCATTCTTGTTTTAGCTGATTTTGTGGGATTTGTCTTCAATTACCTGTATGATTTTGTTGGTGAGATATGGCTTATTGTGAGTGGCATCTTCAAGTTAGCTTCAAGTGCTGAGGCCACAGTGAACACTTATGAGGTTTCTATTTGGCGATCTCTTTGGAATGACCTCTTCTCCCAGGTTTTCCGTGCTGTTAGGAGCATTTTACATGGATTCGTTGCATTTTTTACAGCTTGCAATAGACATCGACTAAGCATATATAATCATATTCGGGAGTTCATTCGAACGCTTAATCAGCCATCCCGGAGGTCATTGCCTTTAAATTCTAGCCAGCATTCACAGAGATCTGGGAGTCGGATACCGGCAGAAGCTGGAGAACGAAAGGTGCTGCCCAGGAGAAGTTTTAAGCAGAGTTAA 2067 41.17 MTRYFYPLTSFQIGDLQSYLSDLSLYLAPDSKDFYVLVDNRPWLEDLASRPAHLWQLMVTKSRMSPFANTRGRKGKKESTEFVDKKVHSKGSSQPRNLKKWFSVVDAATLSKKQAMLPVKKLRSSLLANSKLHRTLYGFIVFKVGWQDVRGINYLNELQTDTSLAIEAKYMKRWEFDSISQAAKCIDTWFPGTERERHLLEEHLDYMLGEVFYDAPKEFPDCHSTNHDETISNASARQENESPYTPRCNLGEKIETLEDETSILHTPPPNGPYKRRKLMSPVGFNLETNYYSELSHGGSVCTPVASFYASDCEGTAEPTEYKDVLLLFRFNDHDLPFELQEIIVSDLRLLTLLEAGLPSWVIFCQSYPVFSHIYRPWMCPLARALYVVISIVTVVIGFYDLYKNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNSEKAIMWFLMMTRTVRSFVSIITQPLAGPFLDFLEVLLPVWNLFVEAGQYFFSFIWILMETSWDLVENVVEVVLVPIGLILSVIWKIVSTVMYPIFWSLWGILYAPIGLILVLADFVGFVFNYLYDFVGEIWLIVSGIFKLASSAEATVNTYEVSIWRSLWNDLFSQVFRAVRSILHGFVAFFTACNRHRLSIYNHIREFIRTLNQPSRRSLPLNSSQHSQRSGSRIPAEAGERKVLPRRSFKQS 688
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00199 688 PANTHER OS05G0597400 PROTEIN 2 670 - -
Lomi1g00199 688 MobiDBLite consensus disorder prediction 671 688 - -
Lomi1g00199 688 MobiDBLite consensus disorder prediction 652 688 - -
Lomi1g00199 688 MobiDBLite consensus disorder prediction 652 668 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00199 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
121174 Lomi1g00199 Lomi4g02602
324024 Lomi2g04471 Lomi1g00199
333453 Lomi1g00199 Lomi2g04471
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1765969 Lomi4g02602 Lomi-Chr4:33532657 dispersed
Lomi Lomi-Chr1:1765969 Lomi2g04471 Lomi-Chr2:49794468 wgd
Lomi Lomi-Chr1:1765969 Lomi5g02189 Lomi-Chr5:32387164 wgd