Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi1g00207 | ATGTCACCAATAACTATATATCTAATACTCATATTCTCTCTTTTCATTCCACCAAACCCAACAACTGCTGATCAATCATTCATCTCAATTCTCATAAACCAAAATGGCCTTAATTTCGTCAAGAATTTGCTCATAACAAAAGCAATTGCATCACTCACACCCACCACAATTTCACAAATTGAAAAGGTTGTTAGAATCCCTGTGATTGGTAAAGTACGTATTGTTCTTTCTGATATTATTATTTACCGGGTCAATGTCGGGTCATCGGATGTTAGACCCGGTGTATCTGGTGTTTCCATTGTTGGGTCAGGTGTTACTTCTGATATGACTGTCAATTGGCATTATTCTTATGGTTCTTGGGTTGGTCCTATTTCGATTTCGGATAGTGGGACTGCTGCTATTGAGGTTAGTGGCATGGAAATTGGTTTAGTGCTAGGTTTGGATTATCAAGAAGGATCTATGAAACTTTATGTTATGGAATGTAACTGTCATATACATGATATCTCCATAGACCTAAAAGGTGGAGCATCTTGGCTCTATCAAGGGATTGTGGATGCTTTTAAAGACGAAATCATATCAGCAGTAGAAAAGGCGTTTACCAAGAAACTGAAGAGTGAGGTTTCAGAGCTTGGATCTGTTCTACAAACTCTTCCAAAACATATTCCAGTGGATAATACTGTTTCATTAAATGTTACATTTGTTAACAACCCTTTCTTGAGTGACACGTCATTGGGGTTCGAGATAAATGGGTTATTCGTGGATTCTAAAACCAACACACTTTCATATCACAACCATTTGCAGCCACCAATCTCTTGTTCAGATCCTTCAAAAATGATTGGAATTGCCCTAGATGAAGCTGTTTTCGAATCTGCTTTCGCCTTATACTACAATGCTATGTTTATGCACTGGATTGTGGATAAAGTTCCCGAACAAAATCTTTTGAACACGGCAGGATGGAGATTTATTATTCCTCAACTCTACAAAAAATACCCAAATGCTGATATGAATTTGAACATCTCTCTGTCTGATCCTCCACTCGTGCAGATAACATCACAGAATATTGCTGCAACAGTCTATGCAGATTTGATCATAGATGTTCTTGGAGCGGATGAAACAATCCCCGTTATTTGCATCTCATTGGTAATGTCAGGCACAGGTTCAGTTCAAATAATCGGAAATAACCTTGCTGGTCATTTGAAACTGGATGGTTTCACCATGTCGTTAAAATGGAGCAAGATTGGCACCTTGCACATGTTTCTTGTTCAGCCTGTGATATGGACAATGATCGAAACTGTTTTCTTGCCGTATGCAAATGCACGGCTAGGGATAGGGTTCCCTTTGCCTATAATCAGCGGCTTTATGCTAGAAAATGCTGAGATAATATCCTCGCAATCTAGAATCACAGTGTGCAGCGACGTTAGTTATGAGGAATCATTTGAGAGCAGCCGCACTCGAATCTACACTTCGTAG | 1470 | 39.18 | MSPITIYLILIFSLFIPPNPTTADQSFISILINQNGLNFVKNLLITKAIASLTPTTISQIEKVVRIPVIGKVRIVLSDIIIYRVNVGSSDVRPGVSGVSIVGSGVTSDMTVNWHYSYGSWVGPISISDSGTAAIEVSGMEIGLVLGLDYQEGSMKLYVMECNCHIHDISIDLKGGASWLYQGIVDAFKDEIISAVEKAFTKKLKSEVSELGSVLQTLPKHIPVDNTVSLNVTFVNNPFLSDTSLGFEINGLFVDSKTNTLSYHNHLQPPISCSDPSKMIGIALDEAVFESAFALYYNAMFMHWIVDKVPEQNLLNTAGWRFIIPQLYKKYPNADMNLNISLSDPPLVQITSQNIAATVYADLIIDVLGADETIPVICISLVMSGTGSVQIIGNNLAGHLKLDGFTMSLKWSKIGTLHMFLVQPVIWTMIETVFLPYANARLGIGFPLPIISGFMLENAEIISSQSRITVCSDVSYEESFESSRTRIYTS | 489 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi1g00207 | 489 | Pfam | LBP - BPI - CETP family, C-terminal domain | 273 | 475 | IPR001124 | GO:0008289(InterPro) | |
| Lomi1g00207 | 489 | SMART | bpi2-2 | 273 | 471 | IPR001124 | GO:0008289(InterPro) | |
| Lomi1g00207 | 489 | SUPERFAMILY | Bactericidal permeability-increasing protein, BPI | 30 | 240 | IPR017943 | GO:0008289(InterPro) | |
| Lomi1g00207 | 489 | SUPERFAMILY | Bactericidal permeability-increasing protein, BPI | 244 | 475 | IPR017943 | GO:0008289(InterPro) | |
| Lomi1g00207 | 489 | PANTHER | OS06G0309200 PROTEIN | 9 | 483 | IPR045897 | - | |
| Lomi1g00207 | 489 | Gene3D | - | 35 | 215 | - | - | |
| Lomi1g00207 | 489 | CDD | BPI2 | 278 | 474 | - | - | |
| Lomi1g00207 | 489 | Pfam | LBP - BPI - CETP family, N-terminal domain | 36 | 209 | IPR017942 | GO:0008289(InterPro) | |
| Lomi1g00207 | 489 | PIRSF | Lipid-binding-protein | 3 | 481 | IPR030675 | GO:0005615(InterPro)|GO:0008289(InterPro) | |
| Lomi1g00207 | 489 | Gene3D | - | 30 | 464 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi1g00207 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:1810507 | Lomi7g00233 | Lomi-Chr7:2345082 | dispersed |