AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00207 ATGTCACCAATAACTATATATCTAATACTCATATTCTCTCTTTTCATTCCACCAAACCCAACAACTGCTGATCAATCATTCATCTCAATTCTCATAAACCAAAATGGCCTTAATTTCGTCAAGAATTTGCTCATAACAAAAGCAATTGCATCACTCACACCCACCACAATTTCACAAATTGAAAAGGTTGTTAGAATCCCTGTGATTGGTAAAGTACGTATTGTTCTTTCTGATATTATTATTTACCGGGTCAATGTCGGGTCATCGGATGTTAGACCCGGTGTATCTGGTGTTTCCATTGTTGGGTCAGGTGTTACTTCTGATATGACTGTCAATTGGCATTATTCTTATGGTTCTTGGGTTGGTCCTATTTCGATTTCGGATAGTGGGACTGCTGCTATTGAGGTTAGTGGCATGGAAATTGGTTTAGTGCTAGGTTTGGATTATCAAGAAGGATCTATGAAACTTTATGTTATGGAATGTAACTGTCATATACATGATATCTCCATAGACCTAAAAGGTGGAGCATCTTGGCTCTATCAAGGGATTGTGGATGCTTTTAAAGACGAAATCATATCAGCAGTAGAAAAGGCGTTTACCAAGAAACTGAAGAGTGAGGTTTCAGAGCTTGGATCTGTTCTACAAACTCTTCCAAAACATATTCCAGTGGATAATACTGTTTCATTAAATGTTACATTTGTTAACAACCCTTTCTTGAGTGACACGTCATTGGGGTTCGAGATAAATGGGTTATTCGTGGATTCTAAAACCAACACACTTTCATATCACAACCATTTGCAGCCACCAATCTCTTGTTCAGATCCTTCAAAAATGATTGGAATTGCCCTAGATGAAGCTGTTTTCGAATCTGCTTTCGCCTTATACTACAATGCTATGTTTATGCACTGGATTGTGGATAAAGTTCCCGAACAAAATCTTTTGAACACGGCAGGATGGAGATTTATTATTCCTCAACTCTACAAAAAATACCCAAATGCTGATATGAATTTGAACATCTCTCTGTCTGATCCTCCACTCGTGCAGATAACATCACAGAATATTGCTGCAACAGTCTATGCAGATTTGATCATAGATGTTCTTGGAGCGGATGAAACAATCCCCGTTATTTGCATCTCATTGGTAATGTCAGGCACAGGTTCAGTTCAAATAATCGGAAATAACCTTGCTGGTCATTTGAAACTGGATGGTTTCACCATGTCGTTAAAATGGAGCAAGATTGGCACCTTGCACATGTTTCTTGTTCAGCCTGTGATATGGACAATGATCGAAACTGTTTTCTTGCCGTATGCAAATGCACGGCTAGGGATAGGGTTCCCTTTGCCTATAATCAGCGGCTTTATGCTAGAAAATGCTGAGATAATATCCTCGCAATCTAGAATCACAGTGTGCAGCGACGTTAGTTATGAGGAATCATTTGAGAGCAGCCGCACTCGAATCTACACTTCGTAG 1470 39.18 MSPITIYLILIFSLFIPPNPTTADQSFISILINQNGLNFVKNLLITKAIASLTPTTISQIEKVVRIPVIGKVRIVLSDIIIYRVNVGSSDVRPGVSGVSIVGSGVTSDMTVNWHYSYGSWVGPISISDSGTAAIEVSGMEIGLVLGLDYQEGSMKLYVMECNCHIHDISIDLKGGASWLYQGIVDAFKDEIISAVEKAFTKKLKSEVSELGSVLQTLPKHIPVDNTVSLNVTFVNNPFLSDTSLGFEINGLFVDSKTNTLSYHNHLQPPISCSDPSKMIGIALDEAVFESAFALYYNAMFMHWIVDKVPEQNLLNTAGWRFIIPQLYKKYPNADMNLNISLSDPPLVQITSQNIAATVYADLIIDVLGADETIPVICISLVMSGTGSVQIIGNNLAGHLKLDGFTMSLKWSKIGTLHMFLVQPVIWTMIETVFLPYANARLGIGFPLPIISGFMLENAEIISSQSRITVCSDVSYEESFESSRTRIYTS 489
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00207 489 Pfam LBP - BPI - CETP family, C-terminal domain 273 475 IPR001124 GO:0008289(InterPro)
Lomi1g00207 489 SMART bpi2-2 273 471 IPR001124 GO:0008289(InterPro)
Lomi1g00207 489 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 30 240 IPR017943 GO:0008289(InterPro)
Lomi1g00207 489 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 244 475 IPR017943 GO:0008289(InterPro)
Lomi1g00207 489 PANTHER OS06G0309200 PROTEIN 9 483 IPR045897 -
Lomi1g00207 489 Gene3D - 35 215 - -
Lomi1g00207 489 CDD BPI2 278 474 - -
Lomi1g00207 489 Pfam LBP - BPI - CETP family, N-terminal domain 36 209 IPR017942 GO:0008289(InterPro)
Lomi1g00207 489 PIRSF Lipid-binding-protein 3 481 IPR030675 GO:0005615(InterPro)|GO:0008289(InterPro)
Lomi1g00207 489 Gene3D - 30 464 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00207 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1810507 Lomi7g00233 Lomi-Chr7:2345082 dispersed