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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00219 ATGTCTTTGGCAGTTGAAGCTGTTTCTAGTTCCAGCAACATGATTCTTGAAGAAAATAAAGAAAAAAATAAAAATGACAATGAAATTGAAGAAAATGCTGAAGAAAAGAAAAGTATAAAAAAAGGTGGGAGTGAATCATCACTTTATGAAACTGAAGATGAAGATGAAGAAGATGCAGAGGATAATAAAATTGAATTGGGTCCTCAGTGCACTCTCAAGGAACAACTTGAAAAAGATAAGGATGATGAAAGCCTGAGAAAGTGGAAAGAACAATTACTTGGAAATGTAGATATTAATAATGTTGGAGAATTACTGGAACCAGAAGTGAAGATTCTCAGCCTTTCAATCGTGTCTCCTGGAAGATCAGACATTTTTCTTGTGATACCAGAAGATGGAAAACCGAAAGGCTTATGGTTTACGTTGAAGGAAGGTTGTCGTTACAGCCTCAGGTTCTCCTTTCAAGTCAGACACAACATTGTTGCAGGTTTTAAGTACACCAACAATGTATGGAAAACTGGTGTTAAGGTGGATAATACAAAACAGATGCTAGGTACTTTTAGCCCCCAACAAGAAGCATACACTTATGATATGCCTGAGGAGACTACACCATCTGGTTACTTTGCAAGAGGCTCTTACTCTGCTAGAACAAAGTTTGTTGATGATGACAACAAATGCTACTTGGAAATCAACTATACGTTTGATATCCGGAAAGATTGGGCTACCATTGAATAG 732 36.89 MSLAVEAVSSSSNMILEENKEKNKNDNEIEENAEEKKSIKKGGSESSLYETEDEDEEDAEDNKIELGPQCTLKEQLEKDKDDESLRKWKEQLLGNVDINNVGELLEPEVKILSLSIVSPGRSDIFLVIPEDGKPKGLWFTLKEGCRYSLRFSFQVRHNIVAGFKYTNNVWKTGVKVDNTKQMLGTFSPQQEAYTYDMPEETTPSGYFARGSYSARTKFVDDDNKCYLEINYTFDIRKDWATIE 243
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00219 243 MobiDBLite consensus disorder prediction 17 48 - -
Lomi1g00219 243 PRINTS RHO protein GDP dissociation inhibitor signature 176 191 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Lomi1g00219 243 PRINTS RHO protein GDP dissociation inhibitor signature 192 204 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Lomi1g00219 243 PRINTS RHO protein GDP dissociation inhibitor signature 159 175 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Lomi1g00219 243 PRINTS RHO protein GDP dissociation inhibitor signature 218 235 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Lomi1g00219 243 Coils Coil 13 36 - -
Lomi1g00219 243 FunFam Rho GDP-dissociation inhibitor 1 62 241 - -
Lomi1g00219 243 PANTHER RHO GDP-DISSOCIATION INHIBITOR 45 239 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER)
Lomi1g00219 243 MobiDBLite consensus disorder prediction 1 16 - -
Lomi1g00219 243 SUPERFAMILY E set domains 48 239 IPR014756 -
Lomi1g00219 243 Gene3D Coagulation Factor XIII, subunit A, domain 1 60 241 IPR024792 -
Lomi1g00219 243 Pfam RHO protein GDP dissociation inhibitor 50 238 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Lomi1g00219 243 MobiDBLite consensus disorder prediction 1 78 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00219 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
118756 Lomi11g01982 Lomi1g00219
121176 Lomi1g00219 Lomi5g02175
324036 Lomi2g04447 Lomi1g00219
333441 Lomi1g00219 Lomi2g04447
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1891365 Lomi3g01402 Lomi-Chr3:11577081 dispersed
Lomi Lomi-Chr1:1891365 Lomi11g01982 Lomi-Chr11:28300430 wgd
Lomi Lomi-Chr1:1891365 Lomi11g01845 Lomi-Chr11:26856895 wgd
Lomi Lomi-Chr1:1891365 Lomi2g04447 Lomi-Chr2:49632425 wgd
Lomi Lomi-Chr1:1891365 Lomi5g02175 Lomi-Chr5:32263699 wgd
Lomi Lomi-Chr1:1891365 Lomi5g01942 Lomi-Chr5:30672725 wgd