Gene detail

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Species

Gene ID

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Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi1g00228	ATGAATTCAACACTTCTCAAAACTCCATCTTTAATTCATTATCGTCATTTCCCATCTTCAAAATTGTCTAAACAGTTTAAGTTAGCCCCCTTTTTGTACAATCACAATCACAATTTTCAGATTTCAAGAACCCGAAAGTTATTCAACGCCAGAAGTTACCCAAAGAATTACATACATATTGAAACCAAAGGTGAAGAATTGACCCAAGATTCATCAAAAAAGGAGAATTTTGAGAAGTTTAATGGTTTAATTAGATGTGGGATTGTAATGGGTATGATGGTTTTAGGGATAATTAGATGTCAAAGAGTTGAGGCAATGGAAACTGGTAGTGATTTAGGGGTTTTTGCACAAAAGGGTTTGAATTATATGAAGGGTTCTTGGAATGGGCCTAAATTTTTACAGGTTCTTCAAGTTATCAGAGAACAAGGTTTGATTTTGGCTGCACTTTTGGGGTTATCTGCCTTTTTTTCTATGGCTGAGACATCAATTACTACACTGTCACCTTGGAAGGTTAGAGAGCTGGCGGAAAAAGAAGGAGAAAATGGCGTTTTCAAGCTGCTACGTACAGATATCACTCGTTTTCTAACTACCATCCTCATTGGCACAACCGTTGTCAACATTGGAGCTACTGCACTTTTTACAGAGGCTGCAACTACGGTTTTTGGCGAAGCTGGTGTTGGTGCAGCAACGGGTGTTATGACGGTGGTCGTTTTACTTCTAACTGAAATTACTCCCAAAAGTATAGCTGTTCACAATGCTACTGCGGTTGCTAGGGTTGTGGTCCGTCCAGTTGCATGGCTTTCTTTGGTTTTATATCCAGTTGGAAGAGTTGTAACATTCCTTTCTATGGGAATGCTTAAAATTCTTGGCTTGAAAGCGAAAAGTGGACCATCTGTCACTGAAGATGAACTCAAGTTGATGTTGAGGGTAGCTGAGTTGAGTGGGGCTATTGAGGAGGAAGAACAGGATATGATCGAGAATGTGTTGGAGATAAAAGACACTCATGTGAAGGAGGTTATGACCCCTCTTGTAGATGTAGTCGCAGTTAATGCTGGTGCAACATTAGTTGATTTCCATCACTTGTGGGTAACTCATCAATATTCAAGGGTGCCAGTATTTGAGCAGCGAATTGATAACATCGTGGGTATAGCTTATGCAATGGATTTGTTGGATCTTGTTAAGAAGGGAAATATGCTAGATTCTGCAGTCGTGGGAGAGATTGCTCACAAGCCTGCATATTTTGTTCCTGATTCAATGCTAGTCTGGAATCTTCTGAGAGAATTCCGTATTAGAAAGGTCCACATGGCTGTTGTTCTCAATGAATATGGAGGAACTGTGGGAATTGTAACACTTGAAGATCTTGTTGAAGAAATTGTGGGTGAAATCTTCGATGAGAATGACTCAAAGGAGGAAATTGAGAGAAAAACTGGTAATATTGTAAAGCGAGCAGAGGGAGTGTTCGATGTTGATGCAAATACATCAATTTACCAACTTTCTGAAGATCTAGATATCATATTGCCAGAGGATCACCAATATGAGACGGTTTCAGGTTTCATTTGTGAAGCATTTGGATATATACCAAGAACAGGTGAAAGTATTAAAGTAGTTCTAAAGAAAGCAAACGAAGAAGAAGATAACGATGATGATGACGAGAGCAAACAAGAAACCGATGGTCAGGATCATAAAGAAACATCTCAGACATTTAAGCTCGGGATATTAGCAGGAAATTGTAGAAAAGTTAATACTGTAAGATTTGAAAAGATTAATAATCATTCAGCAAAAGAAATCAAAGAAGCTGCTCGTATCGTGCCCAGATTTTGGAAAACGAAATGGAAAAATGATGAAAGCTGA	1851	38.74	MNSTLLKTPSLIHYRHFPSSKLSKQFKLAPFLYNHNHNFQISRTRKLFNARSYPKNYIHIETKGEELTQDSSKKENFEKFNGLIRCGIVMGMMVLGIIRCQRVEAMETGSDLGVFAQKGLNYMKGSWNGPKFLQVLQVIREQGLILAALLGLSAFFSMAETSITTLSPWKVRELAEKEGENGVFKLLRTDITRFLTTILIGTTVVNIGATALFTEAATTVFGEAGVGAATGVMTVVVLLLTEITPKSIAVHNATAVARVVVRPVAWLSLVLYPVGRVVTFLSMGMLKILGLKAKSGPSVTEDELKLMLRVAELSGAIEEEEQDMIENVLEIKDTHVKEVMTPLVDVVAVNAGATLVDFHHLWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDLVKKGNMLDSAVVGEIAHKPAYFVPDSMLVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDLVEEIVGEIFDENDSKEEIERKTGNIVKRAEGVFDVDANTSIYQLSEDLDIILPEDHQYETVSGFICEAFGYIPRTGESIKVVLKKANEEEDNDDDDESKQETDGQDHKETSQTFKLGILAGNCRKVNTVRFEKINNHSAKEIKEAARIVPRFWKTKWKNDES	616

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi1g00228	616	FunFam	Magnesium-cobalt efflux protein CorC	317	467	-	-
	Lomi1g00228	616	Pfam	Transporter associated domain	481	584	IPR005170	-
	Lomi1g00228	616	Gene3D	-	475	568	IPR016169	-
	Lomi1g00228	616	SMART	CorC-HlyC-2	480	589	IPR005170	-
	Lomi1g00228	616	ProSiteProfiles	CBS domain profile.	408	465	IPR000644	-
	Lomi1g00228	616	SMART	cbs-1	345	394	IPR000644	-
	Lomi1g00228	616	SMART	cbs-1	411	459	IPR000644	-
	Lomi1g00228	616	SUPERFAMILY	FAD-binding-transporter-associated domain-like	478	541	IPR036318	GO:0050660(InterPro)
	Lomi1g00228	616	CDD	CBS-pair-CorC-HlyC-assoc	335	456	IPR044751	-
	Lomi1g00228	616	ProSiteProfiles	CNNM transmembrane domain profile.	135	321	IPR002550	-
	Lomi1g00228	616	Pfam	Cyclin M transmembrane N-terminal domain	144	321	IPR002550	-
	Lomi1g00228	616	MobiDBLite	consensus disorder prediction	541	565	-	-
	Lomi1g00228	616	ProSiteProfiles	CBS domain profile.	340	401	IPR000644	-
	Lomi1g00228	616	Pfam	CBS domain	404	459	IPR000644	-
	Lomi1g00228	616	Pfam	CBS domain	336	393	IPR000644	-
	Lomi1g00228	616	PANTHER	HEMOLYSIN-RELATED	117	595	-	-
	Lomi1g00228	616	Gene3D	-	315	470	IPR046342	-
	Lomi1g00228	616	SUPERFAMILY	CBS-domain pair	323	462	IPR046342	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi1g00228	K03699	magnesium and cobalt exporter, CNNM family

Event-related genes

Select	Gene_1	Gene_2	Event_name
	324043	Lomi2g04431	Lomi1g00228
	333434	Lomi1g00228	Lomi2g04431

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:1968642	Lomi2g04094	Lomi-Chr2:46588917	dispersed
	Lomi	Lomi-Chr1:1968642	Lomi2g04431	Lomi-Chr2:49532213	wgd