AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00230 ATGGAATTTAACGTAGAAGAAGCGCTTAGAGCGAAAGATAGTGCGGAGAAGCTGTTTTCAGTAAACGATTACACGGGTGCAAAACAATATGCTTTGAAAGCCCAAGCATTGTGCCCGCAACTTGAAGGCATTTCTCAAATGGTGGCTACTTTTGAAATTTACGCTGCAGCTCAGACAAAAATAAACAGTGAAATTGATTTGTATTCAGTTCTTGGATTACATCCATCAGTGGAGAAATCTGTATTGAAGAAACAATACAAAAAAATGGCAGTTCTTCTTCACCCTGATAAGAATAAAACGATGGGAGCGGATGAAGCTTTTAAGCTCGTTTCTGAAGCGTGGAGCGTGTTATCTGATAATGCAAAAAGAAAATCTTATGATGTTAGGAGAAATAATCACTTATTAGCAACGGTTTCTCAGTCTTCTGGTAAACTCGACACCTTCTGGACTGTGTGCACATCATGTCGTGTTCAATATGAATATCTTAGAAAGTACGTGAATAAACGACTTTCGTGTAAGAATTGCCGTGGGGTTTTTGTAGCAGTTGAAACAGGAGCAGCTCCCGTGACTTATTGTCCATGGTCATATGCGGCTGATAATAATGGGTATGCCAACCATTCATATAATGCTAACACTGCTACTTATTTACCGAATTCATCAGTGTGTTTTACAGGCAACGGGTGCTCAGTTTTTCAATCTCCACATGGACCTGAATACACGAGCAGTGTATCATTTCAGTGGAATACTTCAACAGGTATTCCCGATCCTAATCTCGTTCATAAACCAAATGGACGAGCAAAAGCCAAGCACAGCGTCAGAAATTCTTTGGCGAATATGGGTTCAAATGAAATCCCGCCTGTTAGGCTCGGTAGGCCTCCTAAGAAGAGAAAGATTGAAATGGGAGACGGGCCTCAAATCCCAAATGGCGAGATATTATTCAAAACTGATCCTGATGTGGTGGTAAGTAATGGAAATACCGTCACCGACACATCAACCAGATGGTATAATCCACCTCCTGTTTTTGATGCTAGAAAGTTATTAATTGATAAAGCTAGATCAGTGATTCGGTGCAAGTTAGAGGAAATGAAGTTGGCTTCAAAGAATGGTAAAACCATGAAGAAAACGAGCCCGGGGCCGATAACCGTCCCTGACCCAGATTTTCATGATTTTGACATGGATAGATCAGAAGAAGTATTCAAACCGAAGCAAATATGGGCCATATATGATGAAGAAGACGGGATGCCTCGTCTTTACTGTCTAATTCGCCAGGTTATTTCAGTCAAACCGTTTCAGCTCTATATTAGCTACTTAAATTCAAAATCCGACACAGAATTTGGTTCAGTCAAATGGATTGAATCCGGATTCACTAAATCATGTGGAAATTTCCGTGTTTTCCATTCTGATATTGTTGACCAAGTCAACATCTTTTCTCATCTCTTGGGCCGAGAGAAGGCCGGTAGAGGAGGGTGTGTTAAAATATACCCAAAAAGTGGAGATGTTTGGGCCGTGTATCGGAACTGGTCGGTTGATTGGAACCGAAAGACGCCAAAAGAAGTGAGGCACCAGTATGAAATGGTGGAAATTGTTGATGATTATTCTGAAGAGCGTGGAGTATGCGTAACTCCATTGGTGAAACTAGAAGGTTACAAAACGGTTTATCAGAGAGACTCCAAGAACCCAAACCGTTGGATCCCTAGAAGAGAAATGTTACGGTTTTCTCACCAAGTTCCATCTTGTGTACTCAGAGGTCAGGCCCTTAATTTGCCTGACGGGTGTTGGGATCTTGACCCGGCTGCAACCCCCGAAGAACTTCTTCGGGCTGCAATGGAGGAAAAACCAGACGTCACAGATGCTACGATGAAAGACTGA 1869 41.95 MEFNVEEALRAKDSAEKLFSVNDYTGAKQYALKAQALCPQLEGISQMVATFEIYAAAQTKINSEIDLYSVLGLHPSVEKSVLKKQYKKMAVLLHPDKNKTMGADEAFKLVSEAWSVLSDNAKRKSYDVRRNNHLLATVSQSSGKLDTFWTVCTSCRVQYEYLRKYVNKRLSCKNCRGVFVAVETGAAPVTYCPWSYAADNNGYANHSYNANTATYLPNSSVCFTGNGCSVFQSPHGPEYTSSVSFQWNTSTGIPDPNLVHKPNGRAKAKHSVRNSLANMGSNEIPPVRLGRPPKKRKIEMGDGPQIPNGEILFKTDPDVVVSNGNTVTDTSTRWYNPPPVFDARKLLIDKARSVIRCKLEEMKLASKNGKTMKKTSPGPITVPDPDFHDFDMDRSEEVFKPKQIWAIYDEEDGMPRLYCLIRQVISVKPFQLYISYLNSKSDTEFGSVKWIESGFTKSCGNFRVFHSDIVDQVNIFSHLLGREKAGRGGCVKIYPKSGDVWAVYRNWSVDWNRKTPKEVRHQYEMVEIVDDYSEERGVCVTPLVKLEGYKTVYQRDSKNPNRWIPRREMLRFSHQVPSCVLRGQALNLPDGCWDLDPAATPEELLRAAMEEKPDVTDATMKD 622
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00230 622 Gene3D DnaJ domain 53 151 IPR036869 -
Lomi1g00230 622 PRINTS DnaJ domain signature 102 122 IPR001623 -
Lomi1g00230 622 PRINTS DnaJ domain signature 68 86 IPR001623 -
Lomi1g00230 622 PRINTS DnaJ domain signature 86 101 IPR001623 -
Lomi1g00230 622 SMART dnaj-3 65 122 IPR001623 -
Lomi1g00230 622 CDD DnaJ 66 119 IPR001623 -
Lomi1g00230 622 Pfam DnaJ domain 66 127 IPR001623 -
Lomi1g00230 622 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Lomi1g00230 622 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Lomi1g00230 622 Pfam Domain of unknown function (DUF3444) 379 584 IPR024593 -
Lomi1g00230 622 PANTHER BNAC03G44070D PROTEIN 1 600 - -
Lomi1g00230 622 SUPERFAMILY Chaperone J-domain 61 136 IPR036869 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00230 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
121184 Lomi1g00230 Lomi5g02156
324045 Lomi2g04427 Lomi1g00230
333432 Lomi1g00230 Lomi2g04427
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1998015 Lomi7g00343 Lomi-Chr7:3533858 dispersed
Lomi Lomi-Chr1:1998015 Lomi2g04427 Lomi-Chr2:49508390 wgd
Lomi Lomi-Chr1:1998015 Lomi3g00793 Lomi-Chr3:6433454 wgd
Lomi Lomi-Chr1:1998015 Lomi5g02156 Lomi-Chr5:32133749 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00230 ACH,LST 7 221 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.488 5.65e-31 121.0
Lomi1g00548 . 52 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.066 2.43e-08 53.5
Lomi1g03198 LST 51 138 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.545 3.40e-06 48.5
Lomi2g04077 . 66 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.028 2.89e-08 53.1
Lomi2g04427 ACH,LST 7 221 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.488 3.85e-31 122.0
Lomi2g04654 . 17 421 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 36.049 1.48e-80 254.0
Lomi3g00048 LST 17 161 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 51.974 8.21e-43 158.0
Lomi3g00793 . 7 221 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.093 3.25e-27 110.0
Lomi3g01755 ACH,LST 7 199 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.091 5.94e-31 121.0
Lomi4g01733 ACH,LST 7 199 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.091 9.43e-31 120.0
Lomi4g03034 ACH 66 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.211 8.28e-09 54.3
Lomi4g03133 LST 17 163 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 50.968 3.81e-41 154.0
Lomi5g01835 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.661 9.45e-22 94.7
Lomi5g02156 ACH 5 206 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.663 5.45e-30 118.0
Lomi5g02868 ACH 66 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.62 9.90e-09 54.3
Lomi6g00280 . 7 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.588 1.41e-09 58.2
Lomi6g01273 LST 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.127 1.12e-24 103.0
Lomi6g02640 LST 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.98 5.19e-28 112.0
Lomi7g00343 . 7 206 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 37.129 2.62e-29 116.0
Lomi7g01115 LST 7 199 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.175 1.39e-24 103.0
Lomi7g02224 LST 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.612 3.49e-27 110.0
Lomi8g02395 ACH,LST 7 140 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 41.045 9.83e-25 103.0
Lomi9g01556 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.0 7.82e-25 104.0
Lomi9g01673 . 7 311 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 47.493 1.77e-94 281.0
Lomi9g01909 ACH,LST 7 147 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.437 4.89e-26 103.0
Lomi10g02764 ACH,LST 7 140 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 44.03 1.53e-26 109.0
Lomi11g01058 ACH 7 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.0 2.68e-23 99.4
Lomi11g02631 . 66 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.62 1.10e-08 54.3
Lomi12g00443 ACH,LST 7 147 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 37.324 1.94e-24 99.4