Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi1g00231	ATGGTGGGGCTATCTGTTGGAGAAAAGCATTTCATACAAGGTGGAATTGCACAAGACCTTCGTACTGATGGTCGTAAACGATTATCGTACAGACCCATATTTGTGGAATCTGGAGTGATTGCTCAAGCAAATGGTTCAGCAAAAGTGAAGATGGGTAAAACTGAAGTCATAGCCAGTGTAAAGGCTGAGCTAGGAAGACCAAGTTCCTCAGCGCCCGACAAAGGAAAAGTTTCCATATTTATTGATTGTAGTCCCACAGCAGCACCAGAATTTGAGAGGAGAGGGGGTGAAGAATTGTCAATGGAATTGTCTGCAGCCCTTCGACAATGTCTTTTGGGAGGTAAAAGTGGAGCAGGAGCTGGAATTAATCTTTCGTCTCTGTCAATCGTGGATGGGAAGGTCTGTTGGGATTTATATATCGATGGTCTTGTGATTAGTATGGATGGAAATATACTCGATGCCTTGGGTGCAGCCATCAAGGCTGCTTTAAGCAATACAGGTATTCCAAAAGTGAATGTTGCTTTGGCTGCCTCTTCTGATGAACAACCAGAGGTTGATGTGAGTGATGAAGAGTTTCTACAATTTGACACCACCGCAGTTCCTGTCATAGTTACTTTAACCAAGGTTGGAAGGCATTATATTGTAGATGCAACTTCAGAGGAGGAATCACAAATGAGTTCTGCTGTCTCTGTTTCCATCAATAGGCAAGGACTGATTTGTGGGCTGACCAAAAGAGGGGGTGCAGGTTTGGATCCGAGTGTCATACTTGACATGATATCGGTGGCTAAACATGTAAGTGAGCAGTTAATGAACAAATTGGATTCTGAGATCGCTGCAGCTGAGGCTATGGAAGAATGA	858	43.71	MVGLSVGEKHFIQGGIAQDLRTDGRKRLSYRPIFVESGVIAQANGSAKVKMGKTEVIASVKAELGRPSSSAPDKGKVSIFIDCSPTAAPEFERRGGEELSMELSAALRQCLLGGKSGAGAGINLSSLSIVDGKVCWDLYIDGLVISMDGNILDALGAAIKAALSNTGIPKVNVALAASSDEQPEVDVSDEEFLQFDTTAVPVIVTLTKVGRHYIVDATSEEESQMSSAVSVSINRQGLICGLTKRGGAGLDPSVILDMISVAKHVSEQLMNKLDSEIAAAEAMEE	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi1g00231	285	FunFam	Exosome complex component RRP42	3	285	-	-
	Lomi1g00231	285	Pfam	3' exoribonuclease family, domain 1	30	169	IPR001247	-
	Lomi1g00231	285	SUPERFAMILY	Ribosomal protein S5 domain 2-like	4	223	IPR020568	-
	Lomi1g00231	285	PANTHER	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	1	281	IPR050590	GO:0000176(PANTHER)\|GO:0000177(PANTHER)\|GO:0000467(PANTHER)\|GO:0016075(PANTHER)\|GO:0017091(PANTHER)\|GO:0034427(PANTHER)\|GO:0034473(PANTHER)\|GO:0034475(PANTHER)\|GO:0034476(PANTHER)\|GO:0043928(PANTHER)\|GO:0071028(PANTHER)\|GO:0071035(PANTHER)\|GO:0071038(PANTHER)\|GO:0071042(PANTHER)
	Lomi1g00231	285	CDD	RNase-PH-RRP42	4	275	-	-
	Lomi1g00231	285	Gene3D	-	3	285	IPR027408	-
	Lomi1g00231	285	Pfam	3' exoribonuclease family, domain 2	200	263	IPR015847	-
	Lomi1g00231	285	SUPERFAMILY	Ribonuclease PH domain 2-like	196	281	IPR036345	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi1g00231	K12589	exosome complex component RRP42