AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi1g00235 | ATGTCATCAAAATCAACTAGCAGAACTCATTGTTCAAGAAGCAGTTCTTCAAGATTGAGACATGGTGCAAGAGTTGTTTTACAAACCCCAATTGATGCTAAACTTCATGTTGATTTTGAAGAATCTGAAAGACAATTTGATTACTCAACTTCAGTTGATGTAAATGCATCAACTTCAACTAGCAATGTTCCTTCATCAGCTGTATCAGCTTATTTGCAAAAAATGCAAAGAGGTAGTCAAATTCAGCCTTTTGGTTGTATGATTGCCATTGACGATCAGAGTTTATGTGTATTAGCTTTCAGCGAAAATGCACTCGAGATGCTCGATTTAGCTCCACACGCAGTCCCAAGTATCGAACAACAAGAAGCTTTAACATTCGGAACTGATGTTCGAACCCTTTTTCGATCTTCAAGTGCATCTGCTCTCCAGAAAGCAGTTAATTTCCCGGAGGTTAATCTGTTAAACCCTATATTAGTTCATTGTAGGAGTTCAGGTAAACCGTTTTACGCCATTTTACATAGAAATGATGTAGGGTTGATTATAGATTTGGAGCCTGTGAATCCAGCTGATGTGCCTGTAACAGCTGCTGGAGCTTTGAAGTCTTATAAGCTTGCTGCAAAATCGATTTCTAGATTACAATCTTTACAAAGTGGGAATATTACTAGATTGTGTGATGTATTGGTTAAGGAGGTGAGTGAGTTAACCGGGTATGATCGTGTTATGGTTTATAAATTTCATGAAGATGAACATGGTGAAGTTATTGCAGAGTGTCGAAAACCTGATCTCGAGCCCTATCTTGGCTTACATTACCCTGCAACCGATATTCCACAAGCTTCAAGATTTCTTTTTATTAAGAATAAAGTTAGGATGATTTGTGATTGTACAGCTCAACCTGTGAAAGTGATCCAAACAAAGAATTTATCTCAGCCACTAAATCTTTCTGGGTCTGCCTTGAGAGCGCCACATGGATGTCATTCTCAGTACATGGCAAACATGGGGTCGATTGCATCTCTTGTGATGTCGGTTACCATCAACGATGGCGATGACGACGATGTTGATAATGATGGTGACGAGTCTGAAAGCGGTTTTAATCAGCAACAACAGCATAAGGGGAAAAGATTATGGGGTTTAGTTGTTTGCCATCACTCAAGTGCTCGTTTTGTACCGTTTCCTTTGAGGTACGCCTGCGAGTTTTTGATTCAAGTTTTCAGTGTCCAAATAAATAAAGAAGTAGAGTTGACCGGTCAACTACGAGAAAAACATATCTTGAGAACACAGACCGTGCTTTGTGATATGCTTCTGAGAGATGCACCTATTGGAATCATGACTCAATCGCCTAATGTAACGGATCTTGTTACATGTGATGGGGCTGCACTATACTACAAAAATAAGTTTTGGTTGCTTGGGGTCACACCAACCGAATCACAAATCAAAGATATAGCAAATTGGCTTGTAGAAGAACATGTAGGGAGTACGGGTTTAAGCACGGATAGTCTCATGGATGCTGGATATCCAAATGCTTTGGTTCTAGGAAAAGCCGTTTGTGGAATGGCAGCTATCAAGATTACCTCAAAAGATTTCCTTTTCTGGTTTCGGTCCCATACTGCAAAGGAAGTGAAATGGGGTGGGGCCAAACATGACCCGGATGAAAAAGACGATGGGCGAAGAATGCATCCACGGTCATCATTCAAGGCATTTTTGGAGGTGGTTAAGAACCGGAGTTCACCATGGGAAGATGTAGAAATGGATGCCATTCATTCTTTACAGTTGATACTTAGAGGATCTTTGCAAGATGATTATGAGGTGATGGGTGATGATAATGATAAAAAAATCGTGATCGTTCCCGCTATTGATACAAGCATACAACGGGTTGATGATTTGCGTGTCGTGGCTAATGAAATGGTTCGCCTTATTGAGACTGCTTCAGTTCCTATATTTGCTGTTGATAGCAATGGAAATATCAGCGGATGGAACGATAAAATAGGCGAGATTACTGGATTGCCATTGGATCAAGCCATTGGCATCCCGTTAGTCGATTTGGTTGTTGATGCCTCGATTGATGAAGTCAAAGTCATGCTCTCTTCTGCTTTACAAGGCATTGAGCAGAAAGATGTGGTAATTAGCCTTAAATGTTTTGGTAATCTAGAAATAAATGACCACATTACCCTTGTTACGAACGCTTGTTGTAGCCGCGATCTAAGTGAAACGATCGTTGGGGTATGCTTTGTCGGACAAGATTTAACGGCTCAAAAGTTAATCACAGACAAATACACGAAAGTCAAAGGTGATTATTCTAGTATTGTACATAGCCCGTGTGCACTTATTCCTCCGATTTTCATGATGGACGAATATGGTAAATGCTTGGAATGGAATGATGCGATGACCAAATTAACTGGTTTGAAGAGGGAAGAAGCCAATAACCGAATGCTTCTCGGTGAAGTTTTTACCATTGGTAGTTACGGTTGTCGGGTCAAAGAAGATACTTTGACCAGGCTTAAGATATTACTAAATGAATTGATTTCTGGGTTGGATTCAGATAAGTTGTTGTTTGGTCTTTTTGACCAAAATGGTAAGTATGTGGAGGCGTTACTTTCTGCTAACAAAAGGGTTGATGGTGATGGAAAAATTATAGGAGTTTTGTGTTTTTTACATGTAACGAGCCCTGAGCTTCAACACGCCATGTTGGTGCAGAAAATGTCTGAGCAGGCTGCTTTGAATAGCCTTACAAAAGTGTCTTACTTGCGCCATGAACTTAAAAGTGGTCTAAACGGAATCAAATGTATTGAAGATTTGATGGAAGCAACAGAGTTATGTGACGAGCAGAAACATATTGTGCATAAGAGTCACTTGTGTCGAGAACAATTAGCACAGATTGTTGATGATACTGATATAGAAAGCATCGAACAGTGTTATTTAGAAATGAAATGTGCGGAATTCAAACTTTGGGAGTCTTTGGAGGTGGTTCTGAACCAAGTCACGAGTCTAAGCCGTGAACGGGAAGTGGAAGTCATTTACGAAGCATCCGAACAGGTGTCATCTTTATCCGTATTTGGTGACAATTTGCGGCTTCAACAAGTCCTTTCGGACTTCTTATCAAGCGCTCTCAACTTCACTCCCGAATTCGAAGGATCTTCAGTTTCGTTTCGTGTAACTCACACGATGGAACGCATAGGAACGAAAATACAGGTGGCACATCTCGAATTCAGAATTACCCATCCGGCACCAGGGATACCTGAGAAATTGGTTCAGGATATGTTTCACACGAGCCGAAGTGTTTCAAGAGAAGGTCTTGGACTTTACATAAGTCAAAAGCTCGTTAAGATCATGAACGGAACCGTACAGTATCTTAGGGAGGCCGAGAGGGCTTCTTTCATTGTTTTAATCGAGTTTCCAATAGCGCCTTCATTGACTTCCGATGCTAAACGATCAAAAAGAATATGA | 3441 | 40.57 | MSSKSTSRTHCSRSSSSRLRHGARVVLQTPIDAKLHVDFEESERQFDYSTSVDVNASTSTSNVPSSAVSAYLQKMQRGSQIQPFGCMIAIDDQSLCVLAFSENALEMLDLAPHAVPSIEQQEALTFGTDVRTLFRSSSASALQKAVNFPEVNLLNPILVHCRSSGKPFYAILHRNDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKSISRLQSLQSGNITRLCDVLVKEVSELTGYDRVMVYKFHEDEHGEVIAECRKPDLEPYLGLHYPATDIPQASRFLFIKNKVRMICDCTAQPVKVIQTKNLSQPLNLSGSALRAPHGCHSQYMANMGSIASLVMSVTINDGDDDDVDNDGDESESGFNQQQQHKGKRLWGLVVCHHSSARFVPFPLRYACEFLIQVFSVQINKEVELTGQLREKHILRTQTVLCDMLLRDAPIGIMTQSPNVTDLVTCDGAALYYKNKFWLLGVTPTESQIKDIANWLVEEHVGSTGLSTDSLMDAGYPNALVLGKAVCGMAAIKITSKDFLFWFRSHTAKEVKWGGAKHDPDEKDDGRRMHPRSSFKAFLEVVKNRSSPWEDVEMDAIHSLQLILRGSLQDDYEVMGDDNDKKIVIVPAIDTSIQRVDDLRVVANEMVRLIETASVPIFAVDSNGNISGWNDKIGEITGLPLDQAIGIPLVDLVVDASIDEVKVMLSSALQGIEQKDVVISLKCFGNLEINDHITLVTNACCSRDLSETIVGVCFVGQDLTAQKLITDKYTKVKGDYSSIVHSPCALIPPIFMMDEYGKCLEWNDAMTKLTGLKREEANNRMLLGEVFTIGSYGCRVKEDTLTRLKILLNELISGLDSDKLLFGLFDQNGKYVEALLSANKRVDGDGKIIGVLCFLHVTSPELQHAMLVQKMSEQAALNSLTKVSYLRHELKSGLNGIKCIEDLMEATELCDEQKHIVHKSHLCREQLAQIVDDTDIESIEQCYLEMKCAEFKLWESLEVVLNQVTSLSREREVEVIYEASEQVSSLSVFGDNLRLQQVLSDFLSSALNFTPEFEGSSVSFRVTHTMERIGTKIQVAHLEFRITHPAPGIPEKLVQDMFHTSRSVSREGLGLYISQKLVKIMNGTVQYLREAERASFIVLIEFPIAPSLTSDAKRSKRI | 1146 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi1g00235 | 1146 | Pfam | PAS fold | 70 | 186 | IPR013654 | GO:0006355(InterPro) | |
| Lomi1g00235 | 1146 | CDD | HATPase-Phy-like | 1017 | 1130 | IPR044767 | - | |
| Lomi1g00235 | 1146 | Gene3D | - | 416 | 589 | IPR043150 | - | |
| Lomi1g00235 | 1146 | FunFam | Phytochrome | 416 | 548 | - | - | |
| Lomi1g00235 | 1146 | ProSiteProfiles | Histidine kinase domain profile. | 913 | 1134 | IPR005467 | - | |
| Lomi1g00235 | 1146 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1018 | 1127 | IPR003594 | - | |
| Lomi1g00235 | 1146 | Pfam | Phytochrome region | 424 | 598 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lomi1g00235 | 1146 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 777 | 881 | IPR035965 | - | |
| Lomi1g00235 | 1146 | PRINTS | Phytochrome signature | 559 | 577 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lomi1g00235 | 1146 | PRINTS | Phytochrome signature | 134 | 156 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lomi1g00235 | 1146 | PRINTS | Phytochrome signature | 234 | 253 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lomi1g00235 | 1146 | PRINTS | Phytochrome signature | 652 | 667 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lomi1g00235 | 1146 | PRINTS | Phytochrome signature | 745 | 765 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lomi1g00235 | 1146 | PRINTS | Phytochrome signature | 633 | 649 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lomi1g00235 | 1146 | PRINTS | Phytochrome signature | 441 | 461 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lomi1g00235 | 1146 | PRINTS | Phytochrome signature | 526 | 545 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lomi1g00235 | 1146 | PRINTS | Phytochrome signature | 725 | 742 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lomi1g00235 | 1146 | PRINTS | Phytochrome signature | 319 | 340 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lomi1g00235 | 1146 | SMART | pas-2 | 762 | 833 | IPR000014 | - | |
| Lomi1g00235 | 1146 | SMART | pas-2 | 632 | 698 | IPR000014 | - | |
| Lomi1g00235 | 1146 | SUPERFAMILY | ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase | 965 | 1131 | IPR036890 | - | |
| Lomi1g00235 | 1146 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lomi1g00235 | 1146 | NCBIfam | PAS domain S-box protein | 637 | 703 | IPR000014 | - | |
| Lomi1g00235 | 1146 | PIRSF | Phytochrome-conventional | 2 | 1141 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Lomi1g00235 | 1146 | SMART | HKATPase-4 | 1018 | 1134 | IPR003594 | - | |
| Lomi1g00235 | 1146 | MobiDBLite | consensus disorder prediction | 347 | 368 | - | - | |
| Lomi1g00235 | 1146 | ProSiteProfiles | PAS repeat profile. | 630 | 700 | IPR000014 | - | |
| Lomi1g00235 | 1146 | PANTHER | OS08G0260000 PROTEIN | 1 | 1007 | - | - | |
| Lomi1g00235 | 1146 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 219 | 401 | IPR016132 | - | |
| Lomi1g00235 | 1146 | Pfam | PAS fold | 633 | 746 | IPR013767 | GO:0006355(InterPro) | |
| Lomi1g00235 | 1146 | Pfam | PAS fold | 763 | 884 | IPR013767 | GO:0006355(InterPro) | |
| Lomi1g00235 | 1146 | Gene3D | - | 951 | 1126 | IPR036890 | - | |
| Lomi1g00235 | 1146 | Gene3D | - | 200 | 572 | IPR029016 | - | |
| Lomi1g00235 | 1146 | Gene3D | PAS domain | 621 | 761 | - | - | |
| Lomi1g00235 | 1146 | SUPERFAMILY | GAF domain-like | 199 | 408 | - | - | |
| Lomi1g00235 | 1146 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 621 | 741 | IPR035965 | - | |
| Lomi1g00235 | 1146 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 319 | 328 | IPR013516 | - | |
| Lomi1g00235 | 1146 | ProSiteProfiles | PAS repeat profile. | 760 | 815 | IPR000014 | - | |
| Lomi1g00235 | 1146 | SMART | gaf-1 | 219 | 421 | IPR003018 | GO:0005515(InterPro) | |
| Lomi1g00235 | 1146 | CDD | PAS | 641 | 709 | IPR000014 | - | |
| Lomi1g00235 | 1146 | Gene3D | PAS domain | 76 | 322 | - | - | |
| Lomi1g00235 | 1146 | SUPERFAMILY | GAF domain-like | 419 | 597 | - | - | |
| Lomi1g00235 | 1146 | CDD | PAS | 774 | 884 | IPR000014 | - | |
| Lomi1g00235 | 1146 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 75 | 188 | IPR035965 | - | |
| Lomi1g00235 | 1146 | FunFam | Phytochrome | 971 | 1132 | - | - | |
| Lomi1g00235 | 1146 | Pfam | GAF domain | 220 | 410 | IPR003018 | GO:0005515(InterPro) | |
| Lomi1g00235 | 1146 | Gene3D | PAS domain | 776 | 890 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi1g00235 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 324048 | Lomi2g04422 | Lomi1g00235 | |
| 333429 | Lomi1g00235 | Lomi2g04422 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:2048551 | Lomi2g03896 | Lomi-Chr2:44657053 | dispersed | |
| Lomi | Lomi-Chr1:2048551 | Lomi2g04422 | Lomi-Chr2:49466206 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lomi1g00163 | . | 1000 | 1119 | Histidine Kinase gene family | AT2G47430 | 43.443 | 5.92e-24 | 95.9 | |
| Lomi1g00235 | LST | 3 | 1110 | Histidine Kinase gene family | AT5G35840 | 60.195 | 0.0 | 1439.0 | |
| Lomi1g00680 | LST | 9 | 1120 | Histidine Kinase gene family | AT1G09570 | 73.112 | 0.0 | 1761.0 | |
| Lomi1g02205 | LST | 5 | 1096 | Histidine Kinase gene family | AT4G18130 | 59.239 | 0.0 | 1358.0 | |
| Lomi1g03326 | ACH,LST | 35 | 1150 | Histidine Kinase gene family | AT2G18790 | 74.485 | 0.0 | 1752.0 | |
| Lomi2g01085 | LST | 35 | 1150 | Histidine Kinase gene family | AT2G18790 | 73.053 | 0.0 | 1714.0 | |
| Lomi2g02127 | LST | 945 | 1057 | Histidine Kinase gene family | AT4G18130 | 46.018 | 2.36e-30 | 111.0 | |
| Lomi2g03896 | LST | 9 | 1120 | Histidine Kinase gene family | AT1G09570 | 72.932 | 0.0 | 1754.0 | |
| Lomi2g04422 | LST | 3 | 1110 | Histidine Kinase gene family | AT5G35840 | 60.195 | 0.0 | 1434.0 | |
| Lomi3g02085 | LST | 73 | 1056 | Histidine Kinase gene family | AT2G01830 | 67.665 | 0.0 | 1332.0 | |
| Lomi4g01445 | LST | 73 | 1049 | Histidine Kinase gene family | AT2G01830 | 67.638 | 0.0 | 1320.0 | |
| Lomi5g01670 | ACH | 5 | 921 | Histidine Kinase gene family | AT5G10720 | 58.874 | 0.0 | 1041.0 | |
| Lomi6g01049 | ACH | 27 | 1197 | Histidine Kinase gene family | AT2G17820 | 60.953 | 0.0 | 1424.0 | |
| Lomi6g02337 | ACH | 1 | 921 | Histidine Kinase gene family | AT5G10720 | 59.474 | 0.0 | 1077.0 | |
| Lomi7g02108 | . | 5 | 921 | Histidine Kinase gene family | AT5G10720 | 59.556 | 0.0 | 1070.0 | |
| Lomi10g01173 | ACH | 27 | 1197 | Histidine Kinase gene family | AT2G17820 | 63.022 | 0.0 | 1475.0 | |
| Lomi13g02076 | ACH,LST | 22 | 1152 | Histidine Kinase gene family | AT2G18790 | 75.707 | 0.0 | 1811.0 | |
| Lomi15g00033 | ACH,LST | 23 | 1154 | Histidine Kinase gene family | AT2G18790 | 74.934 | 0.0 | 1807.0 |