Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi1g00236 | ATGTCAAGAAATTATATTGATAGAGCTATGTTTTCTTACAAGAAACCAAGGGTTAGAGACGGCGCGATTCGTCGGTTTATTTTTGTAGTATCTTTCACTTTGGCTGGTGTTCTTTTGTTATTTTTTCTTGTTGGGATGAATTCAAGTATTGTGTTCATGAAAGAAAGCTCGGTGGAAATCGATAGCGTTACTGAATTTAGCTTTAATATGTCTGCTTTGGTTGATAGTATTAAGCTACCTAAACATAATCGTTTGTCGAAAATGTTGGAGAATAAAAACCAGTTGCCTCCAAGAAACATGGATTTGTATCCAGTTTTAGCTAAAGATCGTATAGTAGTTGTTCTTTATGTTCACAATCGGCCACAATATCTCAAACTAGTGGTGGAAAGTCTTTCTCATGTGTCGAGTATTAATGAAACTTTGTTGATTGTAAGTCATGATGGATACTTTGAAGAAATGAACAAGATTGTAGAAGGTATTAGGTTTTGTCAAGTGAAACAAGTATTTGCACCTTACTCGCCTCATTTATTTTCGGATAGCTTTCCTGGTGTATCCGTTAATGATTGTAAGGATAAAGATGACCCAACTGAGAAAAATTGTGAAGGGACTACTGATCAATATGGAAATCATCGGTCACCAAAGATTGTGTCACTAAAGCATCATTGGTGGTGGATGATGAACACGGTATGGGATGGGCTAAAAGAGACAATTGACCATTCAGGTGATATTCTTTTTATAGAAGAAGATCATTTCATTTTCCCTAACGCGTATCACAATTTAAAGATATTGACGGGATTGAAACCTAGCAAATGTCCAGATTGTTATGCTGCAAATCTTGCTCCAAGTAATGTGAAGTCTAGAGGAGAAGGTTGGAATAGTTTGATAGCCGAGAGGATGGGTAACGTGGGGTACACGTTTAATCGAACGGTTTGGAGGAAAATACATAGAAAAGCTAAAGAATTTTGTTTCTTTGATGATTATAATTGGGATATAACAATGTGGGTAACGGTTTATCCTTCATTTGGTGGTCCGGTTTACTCTATGCGTGGGCCTAGGGCTAGTGCGGTTCACTTTGGGAAATGTGGTTTGCATCAAGGTCAAGGGGAAACCGCTGCTTGTGTAGATAACGGTGTGGTGAATATTGACACACAAGATATCGACAAGGTTCCGAACATTAAAGCTGAATGGGGAGTACACGTTTTTAGTAATCAAGAAGGGTATCAAGCTGGATTTAGAGGGTGGGGAGGATGGGGAGATAAAAGAGACCATCAGTTGTGCTTGGATTTTGCCAAAATGTATCATAAGAGGAGTAAAACATCTTGA | 1323 | 38.1 | MSRNYIDRAMFSYKKPRVRDGAIRRFIFVVSFTLAGVLLLFFLVGMNSSIVFMKESSVEIDSVTEFSFNMSALVDSIKLPKHNRLSKMLENKNQLPPRNMDLYPVLAKDRIVVVLYVHNRPQYLKLVVESLSHVSSINETLLIVSHDGYFEEMNKIVEGIRFCQVKQVFAPYSPHLFSDSFPGVSVNDCKDKDDPTEKNCEGTTDQYGNHRSPKIVSLKHHWWWMMNTVWDGLKETIDHSGDILFIEEDHFIFPNAYHNLKILTGLKPSKCPDCYAANLAPSNVKSRGEGWNSLIAERMGNVGYTFNRTVWRKIHRKAKEFCFFDDYNWDITMWVTVYPSFGGPVYSMRGPRASAVHFGKCGLHQGQGETAACVDNGVVNIDTQDIDKVPNIKAEWGVHVFSNQEGYQAGFRGWGGWGDKRDHQLCLDFAKMYHKRSKTS | 440 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi1g00236 | 440 | Pfam | N-acetylglucosaminyltransferase II (MGAT2) | 95 | 426 | IPR007754 | GO:0005795(InterPro)|GO:0008455(InterPro)|GO:0009312(InterPro)|GO:0016020(InterPro) | |
| Lomi1g00236 | 440 | PANTHER | BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II | 23 | 435 | IPR007754 | GO:0000139(PANTHER)|GO:0005795(InterPro)|GO:0006487(PANTHER)|GO:0008455(InterPro)|GO:0008455(PANTHER)|GO:0009312(InterPro)|GO:0016020(InterPro) | |
| Lomi1g00236 | 440 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 109 | 432 | IPR029044 | - | |
| Lomi1g00236 | 440 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 110 | 370 | IPR029044 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi1g00236 | K00736 | alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.143] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 324049 | Lomi2g04421 | Lomi1g00236 | |
| 333428 | Lomi1g00236 | Lomi2g04421 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:2056557 | Lomi2g04421 | Lomi-Chr2:49457305 | wgd |