AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00236 ATGTCAAGAAATTATATTGATAGAGCTATGTTTTCTTACAAGAAACCAAGGGTTAGAGACGGCGCGATTCGTCGGTTTATTTTTGTAGTATCTTTCACTTTGGCTGGTGTTCTTTTGTTATTTTTTCTTGTTGGGATGAATTCAAGTATTGTGTTCATGAAAGAAAGCTCGGTGGAAATCGATAGCGTTACTGAATTTAGCTTTAATATGTCTGCTTTGGTTGATAGTATTAAGCTACCTAAACATAATCGTTTGTCGAAAATGTTGGAGAATAAAAACCAGTTGCCTCCAAGAAACATGGATTTGTATCCAGTTTTAGCTAAAGATCGTATAGTAGTTGTTCTTTATGTTCACAATCGGCCACAATATCTCAAACTAGTGGTGGAAAGTCTTTCTCATGTGTCGAGTATTAATGAAACTTTGTTGATTGTAAGTCATGATGGATACTTTGAAGAAATGAACAAGATTGTAGAAGGTATTAGGTTTTGTCAAGTGAAACAAGTATTTGCACCTTACTCGCCTCATTTATTTTCGGATAGCTTTCCTGGTGTATCCGTTAATGATTGTAAGGATAAAGATGACCCAACTGAGAAAAATTGTGAAGGGACTACTGATCAATATGGAAATCATCGGTCACCAAAGATTGTGTCACTAAAGCATCATTGGTGGTGGATGATGAACACGGTATGGGATGGGCTAAAAGAGACAATTGACCATTCAGGTGATATTCTTTTTATAGAAGAAGATCATTTCATTTTCCCTAACGCGTATCACAATTTAAAGATATTGACGGGATTGAAACCTAGCAAATGTCCAGATTGTTATGCTGCAAATCTTGCTCCAAGTAATGTGAAGTCTAGAGGAGAAGGTTGGAATAGTTTGATAGCCGAGAGGATGGGTAACGTGGGGTACACGTTTAATCGAACGGTTTGGAGGAAAATACATAGAAAAGCTAAAGAATTTTGTTTCTTTGATGATTATAATTGGGATATAACAATGTGGGTAACGGTTTATCCTTCATTTGGTGGTCCGGTTTACTCTATGCGTGGGCCTAGGGCTAGTGCGGTTCACTTTGGGAAATGTGGTTTGCATCAAGGTCAAGGGGAAACCGCTGCTTGTGTAGATAACGGTGTGGTGAATATTGACACACAAGATATCGACAAGGTTCCGAACATTAAAGCTGAATGGGGAGTACACGTTTTTAGTAATCAAGAAGGGTATCAAGCTGGATTTAGAGGGTGGGGAGGATGGGGAGATAAAAGAGACCATCAGTTGTGCTTGGATTTTGCCAAAATGTATCATAAGAGGAGTAAAACATCTTGA 1323 38.1 MSRNYIDRAMFSYKKPRVRDGAIRRFIFVVSFTLAGVLLLFFLVGMNSSIVFMKESSVEIDSVTEFSFNMSALVDSIKLPKHNRLSKMLENKNQLPPRNMDLYPVLAKDRIVVVLYVHNRPQYLKLVVESLSHVSSINETLLIVSHDGYFEEMNKIVEGIRFCQVKQVFAPYSPHLFSDSFPGVSVNDCKDKDDPTEKNCEGTTDQYGNHRSPKIVSLKHHWWWMMNTVWDGLKETIDHSGDILFIEEDHFIFPNAYHNLKILTGLKPSKCPDCYAANLAPSNVKSRGEGWNSLIAERMGNVGYTFNRTVWRKIHRKAKEFCFFDDYNWDITMWVTVYPSFGGPVYSMRGPRASAVHFGKCGLHQGQGETAACVDNGVVNIDTQDIDKVPNIKAEWGVHVFSNQEGYQAGFRGWGGWGDKRDHQLCLDFAKMYHKRSKTS 440
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00236 440 Pfam N-acetylglucosaminyltransferase II (MGAT2) 95 426 IPR007754 GO:0005795(InterPro)|GO:0008455(InterPro)|GO:0009312(InterPro)|GO:0016020(InterPro)
Lomi1g00236 440 PANTHER BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II 23 435 IPR007754 GO:0000139(PANTHER)|GO:0005795(InterPro)|GO:0006487(PANTHER)|GO:0008455(InterPro)|GO:0008455(PANTHER)|GO:0009312(InterPro)|GO:0016020(InterPro)
Lomi1g00236 440 SUPERFAMILY Nucleotide-diphospho-sugar transferases 109 432 IPR029044 -
Lomi1g00236 440 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 110 370 IPR029044 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00236 K00736 alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.143]
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Event-related genes

Select Gene_1 Gene_2 Event_name
324049 Lomi2g04421 Lomi1g00236
333428 Lomi1g00236 Lomi2g04421
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:2056557 Lomi2g04421 Lomi-Chr2:49457305 wgd