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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00238 ATGGCCGATTCCGACAACGAGAACGCCGGCGGCGAGTTATCAGCAAGAGAACAAGACAGATTCCTTCCGATTGCTAACGTCAGCAGGATCATGAAAAAAGCGTTACCGGCGAACGCGAAGATATCAAAAGACGCTAAAGAAACTGTTCAAGAATGTGTATCGGAATTTATTAGTTTCATCACCGGTGAAGCTTCTGATAAGTGTCAACGTGAGAAACGGAAAACGATCAACGGTGACGATTTATTGTGGGCGATGACGACGTTAGGGTTTGAAGAATACGTTGAGCCGCTGAAAGTTTATTTAGCGAAGTATAGAGAAATGGAAGGGGAGAAAACGACGATAGGAAGACAAGGGGAGAAGGATGGATCGTCCGGTGGTGGTGGCGCCGCCGGCGGCGGTGGTGGGAGTGGCGGTGGTGTGAGTTCGAGTGGTGGTGGTTATAATAATGATGGAGGGATGTATGGAAATAATATGATGATGGGTCGGGTTCATCATCAAATGTATAATTCGGGTTCGGGATATCATCAAATGAGTTTGGGTATGGGTAGTCCGAAGGGTAATTTGGGCAGATCGAGCAGCTTTGGTGGTAGTACTGGTGGTGGTGGTGGAAGTGGCATTATAAAACCTAGGTAG 633 47.39 MADSDNENAGGELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLAKYREMEGEKTTIGRQGEKDGSSGGGGAAGGGGGSGGGVSSSGGGYNNDGGMYGNNMMMGRVHHQMYNSGSGYHQMSLGMGSPKGNLGRSSSFGGSTGGGGGSGIIKPR 210
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00238 210 FunFam Nuclear transcription factor Y subunit B-3 10 130 - -
Lomi1g00238 210 Gene3D Histone, subunit A 11 127 IPR009072 GO:0046982(InterPro)
Lomi1g00238 210 MobiDBLite consensus disorder prediction 109 143 - -
Lomi1g00238 210 SUPERFAMILY Histone-fold 18 126 IPR009072 GO:0046982(InterPro)
Lomi1g00238 210 Pfam Histone-like transcription factor (CBF-NF-Y) and archaeal histone 21 85 IPR003958 -
Lomi1g00238 210 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Lomi1g00238 210 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Lomi1g00238 210 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Lomi1g00238 210 MobiDBLite consensus disorder prediction 185 199 - -
Lomi1g00238 210 ProSitePatterns NF-YB-HAP3 subunit signature. 52 68 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lomi1g00238 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 155 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lomi1g00238 210 MobiDBLite consensus disorder prediction 173 210 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00238 K08065 nuclear transcription Y subunit beta
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Event-related genes

Select Gene_1 Gene_2 Event_name
121185 Lomi1g00238 Lomi4g02572
324051 Lomi2g04419 Lomi1g00238
333426 Lomi1g00238 Lomi2g04419
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:2066333 Lomi8g00453 Lomi-Chr8:3449133 dispersed
Lomi Lomi-Chr10:11657103 Lomi1g00238 Lomi-Chr1:2066333 transposed
Lomi Lomi-Chr1:2066333 Lomi2g04419 Lomi-Chr2:49452191 wgd
Lomi Lomi-Chr1:2066333 Lomi4g02572 Lomi-Chr4:33324445 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00238 ACH,LST 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 86.508 3.89e-75 222.0
Lomi1g02150 . 5 153 CCAAT-HAP3 Transcription Factor family AT5G47670 67.333 6.61e-65 198.0
Lomi1g03645 LST 51 145 CCAAT-HAP3 Transcription Factor family AT2G47810 78.947 1.23e-55 169.0
Lomi2g00747 LST 45 145 CCAAT-HAP3 Transcription Factor family AT2G47810 75.248 1.15e-55 169.0
Lomi2g04419 ACH,LST 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 87.302 2.13e-75 223.0
Lomi4g00247 . 43 157 CCAAT-HAP3 Transcription Factor family AT2G47810 73.913 1.04e-59 182.0
Lomi4g02227 ACH 48 145 CCAAT-HAP3 Transcription Factor family AT2G47810 70.408 2.66e-50 155.0
Lomi4g02572 ACH 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 87.402 2.12e-77 226.0
Lomi5g02494 ACH,LST 48 145 CCAAT-HAP3 Transcription Factor family AT2G47810 73.469 2.60e-52 161.0
Lomi8g00453 ACH,LST 8 156 CCAAT-HAP3 Transcription Factor family AT2G37060 77.852 9.81e-79 229.0
Lomi8g00690 ACH 19 136 CCAAT-HAP3 Transcription Factor family AT3G53340 79.167 6.03e-64 191.0
Lomi9g01109 ACH,LST 1 201 CCAAT-HAP3 Transcription Factor family AT5G47670 60.099 2.55e-74 223.0
Lomi10g00338 ACH,LST 8 156 CCAAT-HAP3 Transcription Factor family AT2G37060 77.852 2.20e-81 236.0
Lomi10g01381 ACH 8 108 CCAAT-HAP3 Transcription Factor family AT4G14540 80.198 4.91e-54 167.0
Lomi10g02533 ACH 1 201 CCAAT-HAP3 Transcription Factor family AT5G47670 59.113 1.27e-72 218.0
Lomi11g02270 ACH,LST 48 139 CCAAT-HAP3 Transcription Factor family AT2G47810 75.0 1.33e-50 157.0
Lomi12g00548 ACH 9 156 CCAAT-HAP3 Transcription Factor family AT2G37060 72.185 1.35e-76 224.0
Lomi12g01130 LST 44 201 CCAAT-HAP3 Transcription Factor family AT5G47670 67.296 8.22e-69 208.0
Lomi13g01054 ACH 35 213 CCAAT-HAP3 Transcription Factor family AT2G13570 63.187 3.30e-63 193.0
Lomi13g01860 ACH,LST 1 173 CCAAT-HAP3 Transcription Factor family AT2G37060 78.771 3.04e-91 261.0
Lomi15g00175 ACH,LST 1 173 CCAAT-HAP3 Transcription Factor family AT2G37060 78.771 1.24e-92 265.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Lomi CBFD_NFYB_HMF 2.1e-27 CL0012 TF NF-YB