Gene detail

Gene Search

Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi1g00239	ATGCCGACATTATCCACACTTTCTCTCGCCTTACTCTTTCTAATCTCTCTCACCACCACCACCACCGCACACAACATCACGCATATCCTCGACAAAAGTCCCGAATTCTCGACCTTCAATCACTACCTCACACTCACTCACCTCGCCGGAGAAATCAACCGCCGTCAAACCATCACCGTCTGCGCCGTTGACAATGCCGCCATGTCCGCCTTAATTGCTAAGGGACTATCACTTGTAACTATAAAAAACGTGCTTTCACTTCATGTGTTTGCTGATTATTTTGGTTCAAAAAAACTTCATCAAGTCACTAAAGGATCAACCTCCACTGCCACCATGTATCAAGCCACCGGTGAAGCCCCTGGCACCACCGGTTACGTCCATATCACCGATGTTAAAGGTGGAAAGGTCCAATTTACCCCGGAAGACAATCCATCACAAACCGACGTCGTTTACGTGAAATCAATTCTCGAAATGCCGTACAACATTTCCGTTATCCAAATCAGCTCAATTCTAAACTCGCCGGAAGCTGAAGCTCCGACGTCGGCACCGGATCTAAACCTAACGTCATTACTTCAACGTGACGGATGTAAATCATTTTACGATTTATTATCAACATCAGGTGCAATCGGTACATTTTTAAGCACAGTTGACGGCGGAGTAACGGTTTTCTGTCCAAGTGATGACGCCATTACTGCATTCGCGCCAAAATACAAAAACCTAACGGCAGATGAGAAAACATCGTTACTGTTATATCACGGCGTTCCGGTTTACAATTCGATGGGGATGTTGAGATCTAGTAACGGATTGACGAACACGTTAGCGACGGAAGGAGGTAAGAAATACGATTTCACGGTGCAAAACGACGGCGAGGATGTGAAGTTGAAAACGACAGTGGTGACTGCGGTGATTACCGGAACGGTGATTGATGATGAACCGGTGGCGATTTATAAGGTTGACAAGGTTTTGCAGCCGCGTGAGTTGTTTAAAGGTGCCAAGGTGGTGGCTGATGAGCCGGCACCGGCGCCGAAATCGGCGAAGAAGAAAAAGGCGGCGAAGAAGGGAACTGCTGCTGCGGATGCGCCTGGGCCGGATTCTGCGAGTGATTTTAGTGACGATGGTGCGGCGGATCAGAAGGCTAATTCCGGTGAGAGAGTGGTGGCGTCGGTTGTTACGGCGTTGTTTTTTGTCGTTGCATTTGTTTTGTAA	1206	47.84	MPTLSTLSLALLFLISLTTTTTAHNITHILDKSPEFSTFNHYLTLTHLAGEINRRQTITVCAVDNAAMSALIAKGLSLVTIKNVLSLHVFADYFGSKKLHQVTKGSTSTATMYQATGEAPGTTGYVHITDVKGGKVQFTPEDNPSQTDVVYVKSILEMPYNISVIQISSILNSPEAEAPTSAPDLNLTSLLQRDGCKSFYDLLSTSGAIGTFLSTVDGGVTVFCPSDDAITAFAPKYKNLTADEKTSLLLYHGVPVYNSMGMLRSSNGLTNTLATEGGKKYDFTVQNDGEDVKLKTTVVTAVITGTVIDDEPVAIYKVDKVLQPRELFKGAKVVADEPAPAPKSAKKKKAAKKGTAAADAPGPDSASDFSDDGAADQKANSGERVVASVVTALFFVVAFVL	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi1g00239	401	Gene3D	FAS1 domain	187	325	IPR036378	-
	Lomi1g00239	401	Gene3D	FAS1 domain	22	170	IPR036378	-
	Lomi1g00239	401	ProSiteProfiles	FAS1-BIgH3 domain profile.	183	322	IPR000782	-
	Lomi1g00239	401	FunFam	Fasciclin-like arabinogalactan protein 2	22	164	-	-
	Lomi1g00239	401	ProSiteProfiles	FAS1-BIgH3 domain profile.	23	171	IPR000782	-
	Lomi1g00239	401	PANTHER	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN	6	392	IPR033254	GO:0046658(PANTHER)
	Lomi1g00239	401	FunFam	Fasciclin-like arabinogalactan protein 10	175	325	-	-
	Lomi1g00239	401	SUPERFAMILY	FAS1 domain	190	324	IPR036378	-
	Lomi1g00239	401	MobiDBLite	consensus disorder prediction	339	377	-	-
	Lomi1g00239	401	SUPERFAMILY	FAS1 domain	29	174	IPR036378	-
	Lomi1g00239	401	SMART	fasc-3	59	175	IPR000782	-
	Lomi1g00239	401	SMART	fasc-3	221	325	IPR000782	-
	Lomi1g00239	401	Pfam	Fasciclin domain	195	324	IPR000782	-
	Lomi1g00239	401	Pfam	Fasciclin domain	34	118	IPR000782	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi1g00239	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	118747	Lomi11g01967	Lomi1g00239
	121186	Lomi1g00239	Lomi5g02153

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:2075149	Lomi8g01651	Lomi-Chr8:18184598	dispersed
	Lomi	Lomi-Chr1:2075149	Lomi11g01967	Lomi-Chr11:28124588	wgd
	Lomi	Lomi-Chr1:2075149	Lomi5g02153	Lomi-Chr5:32097814	wgd