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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi1g00248	ATGGCGGAAGCTTCTAGAATCTTCCATATAACCACACTCATTCCTTCACTATCATCATCGTCTCTCAGAAACCATCGCTGTCAAACAATCAACTTACGTAGATCATCGATCATCCGCTGTACGATCTCCACGACCAATACTAGCAGCAGCAATAGTAGGGAGACAGCTACGACTTCCGTTGGGATACCGTGGGGATGCGAAATAGATTCGGTTGAGAATGCGGCTGCGTTGCAGAAATGGTTGACAGATTCTGGTTTACCGCCACAGAAAATGGATATACGGAAAGTGGATGTTGGTGAGAGAGGTCTTGTTGCTGTTAATAATATTAGGAAGGGCGAAAAGTTGCTGTTTGTACCTCCCTCACTCGTTATTTCAGCCAATTCGGAGTGGAGTTTTCCAGAGGCTGGAGAAGTTTTGAAGAGATATGACGTACCCGACTGGCCATTAATTGCAACCTACCTAATTAGCGAGGCAAGTCTTATGAAGTCGTCTAGATGGAACAACTATATATCAGCCTTGCCAAGACAGCCTTACTCGCTTTTATATTGGACACGTGCGGAATTAGATAGGTACTTGGAAGCATCCCAGATTAGAGAACGGGCCATTGAAAGGATCAATAATGTAACTGGAACATACAATGACATGAGAGAGAGAATTTTCTCCAAGCATCCTAATTTATTTCCTGAAGAGATATTCAATATGGAAACGTTTAGATGGTCCTTTGGCATACTATTTTCACGTTTGGTTCGATTACCCTCGCTGGATGGAAGGGTTGCCTTAGTGCCTTGGGCAGATATGTTGAATCATAGTTGTGATGTGGAAACCAATTTGGATTATGATAAATCAACAAAGGGAGTTGTATTCACAACAGATCGTCCGTACCAGCCAGGTGAGCAGGTGTTTATTTCATATGGTAGGAAATCTAATGGAGAACTTTTGCTCTCTTATGGGTTTGTGCCGAGGCAAGGGACAAATCCACGTGACTCAGTTGAGTTGCAATTGTCACTTAAAAAATCAGATAAATGTTATGAACAGAAGGTGGAAGCTCTTAAGAAGCATGGGTTGTCAGCATCACAATGTTTTCCTTTACAAGTCACTGGTTGGCCATTAGAGCTAATGGCATATGCATATTTAGCCGTCAGTCCGCCTAGTATGAGTGGAAAGTTTGAAGAGATGGCTGCTGCAGCGTCAAATAAAACCACAAGCAATAAGGAAATCAAAAATCCTGAACTAGACGAACAAGCATTCCAGTTTATCTTGGATAGCTGTGAATCCAGTATATCAAAGTACACCAAGTTCCTACAGGCAAGTGGTTCGATGGATTTGGATATAACATCTCCAAAGCAGCTCAACCGAAAAGTGTTCCTTAAACAATTAGCTGTGGACTTATGCAATAGTGAACAGCGGATTCTCTTTCGTGCCCAATATATATTGAGGAGAAAATTGAGGGATATGAGGAGTGGTGAACTGAAGGCCTTAAATTTGTTCGATAGTGTCACAAAGTTCTTCAAATGA	1515	41.98	MAEASRIFHITTLIPSLSSSSLRNHRCQTINLRRSSIIRCTISTTNTSSSNSRETATTSVGIPWGCEIDSVENAAALQKWLTDSGLPPQKMDIRKVDVGERGLVAVNNIRKGEKLLFVPPSLVISANSEWSFPEAGEVLKRYDVPDWPLIATYLISEASLMKSSRWNNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERINNVTGTYNDMRERIFSKHPNLFPEEIFNMETFRWSFGILFSRLVRLPSLDGRVALVPWADMLNHSCDVETNLDYDKSTKGVVFTTDRPYQPGEQVFISYGRKSNGELLLSYGFVPRQGTNPRDSVELQLSLKKSDKCYEQKVEALKKHGLSASQCFPLQVTGWPLELMAYAYLAVSPPSMSGKFEEMAAAASNKTTSNKEIKNPELDEQAFQFILDSCESSISKYTKFLQASGSMDLDITSPKQLNRKVFLKQLAVDLCNSEQRILFRAQYILRRKLRDMRSGELKALNLFDSVTKFFK	504

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi1g00248	504	Gene3D	set domain protein methyltransferase, domain 1	30	318	-	-
	Lomi1g00248	504	Gene3D	-	323	491	IPR036464	-
	Lomi1g00248	504	CDD	SET-RBCMT	88	319	IPR044431	GO:0016279(InterPro)\|GO:0018022(InterPro)
	Lomi1g00248	504	FunFam	Ribulose-1,5 bisphosphate carboxylase-oxygenase large subunit N-methyltransferase, chloroplastic	56	318	-	-
	Lomi1g00248	504	ProSiteProfiles	SET domain profile.	89	305	IPR001214	GO:0005515(InterPro)
	Lomi1g00248	504	Pfam	SET domain	101	305	IPR001214	GO:0005515(InterPro)
	Lomi1g00248	504	Pfam	Rubisco LSMT substrate-binding	338	471	IPR015353	-
	Lomi1g00248	504	SMART	set-7	89	311	IPR001214	GO:0005515(InterPro)
	Lomi1g00248	504	FunFam	Rubisco methyltransferase family protein	324	487	-	-
	Lomi1g00248	504	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	59	479	IPR050600	GO:0016279(PANTHER)\|GO:0018026(PANTHER)
	Lomi1g00248	504	SUPERFAMILY	RuBisCo LSMT C-terminal, substrate-binding domain	335	503	IPR036464	-
	Lomi1g00248	504	SUPERFAMILY	SET domain	73	321	IPR046341	-
	Lomi1g00248	504	PIRSF	RMT-SET	6	501	IPR011192	GO:0009507(InterPro)\|GO:0030785(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi1g00248	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	324059	Lomi2g04411	Lomi1g00248
	333418	Lomi1g00248	Lomi2g04411

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:2122614	Lomi8g01169	Lomi-Chr8:11027966	dispersed
	Lomi	Lomi-Chr1:2122614	Lomi2g04411	Lomi-Chr2:49390950	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Lomi	SET	1.3e-15	No_clan		TR	SET