AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00260 ATGCATAAAACGGCACAATCGTGGTTCAGTGGAGGTCCGAGCCAAACGAACAAAGATCTAACGCAACAATCTCCGTCTCTACTTGCTGATTGGAACGCTTACGCTGCATCATCACAGTCTCAAGATCTAGATTCTGGCCTTGGTTTCGATATCGAATCTGCTGTTAGAACCGCTAATGATAAGGTTTCCGGTACTTTTAATGTAGTTTCACAGGGAGTTAGGGGCATACCTGGAAATCTGCAGTCTGCTACGAGCAATGTCCCAACTGGAAAATCTCTGGTGACATTTGGTACACTTCTTGCAGTTGGGGTGTTCCTCGTCTTCATCGCAGTCACTGTATTTCTACCAGTCATGGTGCTTGTGCCTCAGAAGTTTGCAATCTGTTTCACTATTGGCTGTGCCCTCATAATTGCTTCATTTTTTGCTCTTAAAGGATATAGAACTCAGTTTGCTCATATGACATCTAAAGAGAGACTTCCTATCACGTTGGGATTTATTGGCAGCATGGTGGGTACCATTTATGTTTCAATGGTGCTTCACAGTTACGTTCTTTCTGTGTTCTTCTCTATTTTACAGGTCATCTCACTGTCATACTATGCAATTTCCTACTTTCCCGGAGGATCGGCTGGCGTGAAATTCTTCACTTCTGCCATTACTTCTTCAATTTTGAGATGCTTTGGGAGGTGA 687 43.38 MHKTAQSWFSGGPSQTNKDLTQQSPSLLADWNAYAASSQSQDLDSGLGFDIESAVRTANDKVSGTFNVVSQGVRGIPGNLQSATSNVPTGKSLVTFGTLLAVGVFLVFIAVTVFLPVMVLVPQKFAICFTIGCALIIASFFALKGYRTQFAHMTSKERLPITLGFIGSMVGTIYVSMVLHSYVLSVFFSILQVISLSYYAISYFPGGSAGVKFFTSAITSSILRCFGR 228
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00260 228 MobiDBLite consensus disorder prediction 1 21 - -
Lomi1g00260 228 Pfam Got1-Sft2-like family 93 205 IPR007305 GO:0016192(InterPro)
Lomi1g00260 228 PANTHER UNCHARACTERIZED 1 219 IPR011691 GO:0016020(InterPro)|GO:0016192(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00260 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
324065 Lomi2g04403 Lomi1g00260
333412 Lomi1g00260 Lomi2g04403
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:2181586 Lomi4g02912 Lomi-Chr4:36126337 dispersed
Lomi Lomi-Chr1:2181586 Lomi2g04403 Lomi-Chr2:49330201 wgd