AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi1g00269 | ATGCTTCGATTGATAAAATCGGTCGTTTCTTTAAATGGCCGTCGCCGGATGAGCACCGTAATGAGTTTCGGCGACGGTAGCCACGGTGCTCTCGGCTTACCTACCTCCGTCACCGGAATCGGCTCCGACGCATACGAACCAACTCCGATCAAATCCTTACCTACGGACGTTTGTAGCATCGCCGCCGGTCACTACCACTCTCTCGCCGTTACTTCCAACGGTCACCTCTGGTCATGGGGCCGGAATGTTGAATCACAACTTGGGCGTACCCTTGATTCACCTAGAGAAACATGGGGTGAACCACAAAGAATATATGGTTTGAGTGGTGTGCAATCTGCATTTGCATCAGGTGTTGTATCTGCAGCGATTGATGAAAAAGGGTCCTTATGGATTTGGGGGAAATCGAAACGTGGTCAATTAGGTCTTGGAAAAGGGATCACAGAGGCTGTTTTTCCAAACAGGATAAAAGTTCTTGATAAAGAAGAGTTAATTAAGGTGGCATTCGGATGGGGACATGCTCTTGCACTTACTAAAGATGGAAAGTTGTTTGGTTGGGGTTATTCTGCAGATGGTAGATTAGGAAAGAGAGGAGTTACGGTGGCTTCACCACTTGAGTCAAGTGCTAGTTTATCTTCGGGTTTGAATCTTGAAGATGCTGAGAAAGTAGTGTTGGAAGCTATGGATAAGGAGAATGATATGCCTATTATCTGGGAGCCGTGTTTGATTGATGAACTAAAAGGCGTTGAAGTTGCTGATGTGTCGTGTGGGCTCGACCACACCTTGGTTCTTCTACGTGAAGGAACGTTACTGAGTGGTGGAAGCAATGTATATGGGCAATTGGGTAGATCAAAACAAGTTTTGGAATTTCTTCCGGTTGACATAAGTGTCCACCCGACTTCTATTGCTTCAGGGTTAGGCCATTCGTTTGCCATATGCCAAATCCCACCCGCAGAGGGTGGTGGAGGAATAGCGGGCATCTTTTCATGGGGGTGGGGCCAGAGTTCTCAGCTGGGTAGGGAAGGTCCCACAAACATCCCGTTGCTTGTGGATGGACTTTTAGGAGAAAACCCGGTGTCAGTATCTGGCGGGCGTGTGCACTCCATTGCTCTTACATCTAACGGGGAGGTCTTTTCATGGGGATGTGGTAGAAACGGGCGCCTCGGTTTGTGCAGTTCTGCAGATGAGCCTGAACCCATGTTGATCGAGTTTTCTGAAGAAACAAATGTTCTGCAAGTTGCCTCAGGGTTTGACCATAATCTGGTCCTAAGTAGTTGA | 1275 | 47.84 | MLRLIKSVVSLNGRRRMSTVMSFGDGSHGALGLPTSVTGIGSDAYEPTPIKSLPTDVCSIAAGHYHSLAVTSNGHLWSWGRNVESQLGRTLDSPRETWGEPQRIYGLSGVQSAFASGVVSAAIDEKGSLWIWGKSKRGQLGLGKGITEAVFPNRIKVLDKEELIKVAFGWGHALALTKDGKLFGWGYSADGRLGKRGVTVASPLESSASLSSGLNLEDAEKVVLEAMDKENDMPIIWEPCLIDELKGVEVADVSCGLDHTLVLLREGTLLSGGSNVYGQLGRSKQVLEFLPVDISVHPTSIASGLGHSFAICQIPPAEGGGGIAGIFSWGWGQSSQLGREGPTNIPLLVDGLLGENPVSVSGGRVHSIALTSNGEVFSWGCGRNGRLGLCSSADEPEPMLIEFSEETNVLQVASGFDHNLVLSS | 424 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi1g00269 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 18 | 73 | IPR000408 | - | |
| Lomi1g00269 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 57 | 86 | - | - | |
| Lomi1g00269 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 250 | 279 | - | - | |
| Lomi1g00269 | 424 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 60 | 70 | IPR000408 | - | |
| Lomi1g00269 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 180 | 266 | IPR000408 | - | |
| Lomi1g00269 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 74 | 126 | IPR000408 | - | |
| Lomi1g00269 | 424 | SUPERFAMILY | RCC1-BLIP-II | 19 | 312 | IPR009091 | - | |
| Lomi1g00269 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 324 | 373 | IPR000408 | - | |
| Lomi1g00269 | 424 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 18 | 423 | IPR051210 | - | |
| Lomi1g00269 | 424 | Gene3D | - | 226 | 424 | IPR009091 | - | |
| Lomi1g00269 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 374 | 424 | IPR000408 | - | |
| Lomi1g00269 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 267 | 314 | IPR000408 | - | |
| Lomi1g00269 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 326 | 370 | IPR000408 | - | |
| Lomi1g00269 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 126 | 176 | IPR000408 | - | |
| Lomi1g00269 | 424 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 373 | 422 | IPR000408 | - | |
| Lomi1g00269 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 127 | 143 | IPR000408 | - | |
| Lomi1g00269 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 166 | 182 | IPR000408 | - | |
| Lomi1g00269 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 182 | 196 | IPR000408 | - | |
| Lomi1g00269 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 19 | 35 | IPR000408 | - | |
| Lomi1g00269 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 76 | 92 | IPR000408 | - | |
| Lomi1g00269 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 57 | 70 | IPR000408 | - | |
| Lomi1g00269 | 424 | PRINTS | Chromosome condensation regulator RCC1 signature | 369 | 390 | IPR000408 | - | |
| Lomi1g00269 | 424 | SUPERFAMILY | RCC1-BLIP-II | 326 | 423 | IPR009091 | - | |
| Lomi1g00269 | 424 | Gene3D | - | 7 | 225 | IPR009091 | - | |
| Lomi1g00269 | 424 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 127 | 179 | IPR000408 | - | |
| Lomi1g00269 | 424 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 253 | 263 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi1g00269 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:2275935 | Lomi3g01125 | Lomi-Chr3:9187627 | dispersed | |
| Lomi | Lomi-Chr1:2275935 | Lomi6g00675 | Lomi-Chr6:7775476 | transposed | |
| Lomi | Lomi-Chr1:2275935 | Lomi10g02204 | Lomi-Chr10:21238921 | transposed |