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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00270 ATGACCTTATCTACTTCAAATCTGAACCATTCAGTTAAGTTGTCACGCCAATTTTCGGTTAAGAAAACACATAGACGTACATGTACATTCACTAGAATAAACGCATCACTTGATTTAACTGAAGATAATGTCAAACAAGTTCTAGATGATGCCAGAACAACAAAGTTTTCACATTTATTTGATACATCTGTTGGAATGACAGGAGTTGCAGAATTAGCTGAAGTCGATGGACCGTTTGTGAAGATTAGGCTAAAAGGAAGATTTTGGCATGAACGTTCGCTCATATTAGCGAGACTCGGCAACTATTTGAAAGAAAGGATTCCAGAGATTTTGGAGGTGGATATCGAAGATGAGAAGCAACTAGACGACAGCCCTGAAAACTTTTAA 387 37.47 MTLSTSNLNHSVKLSRQFSVKKTHRRTCTFTRINASLDLTEDNVKQVLDDARTTKFSHLFDTSVGMTGVAELAEVDGPFVKIRLKGRFWHERSLILARLGNYLKERIPEILEVDIEDEKQLDDSPENF 128
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00270 128 Gene3D - 36 115 IPR034904 -
Lomi1g00270 128 PANTHER OS09G0481800 PROTEIN 8 128 - -
Lomi1g00270 128 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 68 114 IPR034904 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00270 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
324069 Lomi2g04386 Lomi1g00270
333408 Lomi1g00270 Lomi2g04386
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:2278027 Lomi2g04386 Lomi-Chr2:49222923 wgd