AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00271 ATGACTGATCACAAAGTAGAAAAGAGTATTGTAGCAACCCCTGATCAAATAGGATCGTCAAATAATCAAGAAGATGATAACTCATCTGGCATTCGAACGGTGGAAACGTTGTTGAGGTTGTTTCCGGTGGGGCTATGTGTGGCTGCACTTGTTGTCATGATTAAAGATTCCGAGTCTAATGAATATGGATCTTTATCTTACTCAAACATCACCGCTTTCAGGTTTCTGGTGCATGCTAATGGAATATGTGCCGGTTATTCGCTACTTTCGGCTGCTTTCACGGCTATACCTCGCCCTGTAACCATGCCTCGAGCCTGGACCTTCTTTCTTCTTGATCAGGTTTTGACATACTTGATACTGGCTGCTGGTGCGGTGGCAACCGAGGTCGCGTTTCTAACATACAAAGGTGATGTGGCGGTGACATGGAGTGAGGCTTGTAGGTCCTACGGCCACTTCTGCAAACAAGCGACAGCATCGATCATCATCACTTTTGTGGTGGTGCTTTGTTACATTTCATTGTCACTCATCTCGTCGTATAGGCTATTCAGCAAGTATGATGCACCTGTTGGGTACCATAACAAAGGGATCGAGATCGTTGACTATGGGAATTAA 612 45.1 MTDHKVEKSIVATPDQIGSSNNQEDDNSSGIRTVETLLRLFPVGLCVAALVVMIKDSESNEYGSLSYSNITAFRFLVHANGICAGYSLLSAAFTAIPRPVTMPRAWTFFLLDQVLTYLILAAGAVATEVAFLTYKGDVAVTWSEACRSYGHFCKQATASIIITFVVVLCYISLSLISSYRLFSKYDAPVGYHNKGIEIVDYGN 203
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00271 203 PANTHER CASP-LIKE PROTEIN 4A4 26 183 - -
Lomi1g00271 203 MobiDBLite consensus disorder prediction 13 28 - -
Lomi1g00271 203 NCBIfam plant integral membrane protein TIGR01569 38 179 IPR006459 -
Lomi1g00271 203 MobiDBLite consensus disorder prediction 1 28 - -
Lomi1g00271 203 Pfam Casparian strip membrane protein domain 29 169 IPR006702 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00271 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
324070 Lomi2g04385 Lomi1g00271
333407 Lomi1g00271 Lomi2g04385
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:2281464 Lomi7g00253 Lomi-Chr7:2486872 dispersed
Lomi Lomi-Chr1:2281464 Lomi2g04385 Lomi-Chr2:49218068 wgd