AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00272 ATGAGGGAAGAAGGAATCAGCTCATCAGGGGACCCATTACTTTTCCCCAATTCCCCTCCTCCTACCACTGCTGCCAGTTCTGCTGGGGCATCATCACCAGCTGTTGCCACCAATGCTGGCAGTACAGATTGGTTGAGTCATGGTCAAGGATCCAAAGCAGGTTCGGTGTCTCGGATTAGTTCGCAGCCCGTGTGGGTTTCGTTTAGTACAAGTGCATGTGGTTCAGCCCTTGGGTCGTCTCAACCTTCGTGTAGACCATGGGAAAGGGGTGATCTTTTAAGACGATTATCTACATTTAGGCCTGCAAATTGGTTTGGAAAACCTAAGGCTGCTAGTTCGCTTGCTTGTGCTAGGAGGGGCTGGGTGAATGTCGATGTTGATAAGATTCAATGTGAGTCTTGTGGTGCAAACCTCAAATACAATGCACCAGAGTCATCGGCTGCCACAGAAGGTGAAAACGGTGAAGAATTTTCCGACCAACTTGATGAAGGACACAATGTCACCTGCCCTTGGAGAGGAAACAGCTGTGCAGAAAGCTTAGTGCAATTCCCTCCTACTCCACCATCAGCCCTAGTGGGGGGTTACAAGGACCGTTGTGATGGACTACTTCAGTTTCCTTATCTACCTGTTGTGGCTGCTTCTGCACTTGACCAGATGAAGGTCTCTAGAGGTCCAGAAATTGACCGCTTTCTGGTTCAGTCACCTGCTTATCTTCCTGATGTTGCATCTGACTTGGAAATATGCATATATTCACGTGCCCAGAAGTTGATCAGTCTCTGTGGATGGGAACCGAGGTGGCTTCCAAATATTCAAGACTTTGAAGAGCATTCTGCTCAATCGGCTAGAAATGGTGGTTCTTTCAGTCCTATAAAAGATCGTGACTGTAACAAGAAAATCTTATCTGCCTCAACAAAAAAAGCTCCAAGGGTTCCCACATCAAAATTTGAATCTAGATCACCATTGTTAGATTGTACTTTATGTGGCGCCACAGTGAGAATTTTGGATTTCATTCATGTTAGTCGTCCTGCTCGTTTTGCTCCTAACAATATCGATGTCCCTGAAACGAGTAAAAAAATGGTACTTACCCGTGGAATAAGCGCGGCTAGCGGAATTAGCGGATGGGTAGCTGATGGCGGCATTGAGAAAGAGCAGACAGAGGATATTGATGAAGCTGCAACTACTGGTGATGGGAAGTCAGTGTCAAATATCGGGATGGATTTGAATCTTACGATGGGCAGTGGATTTTCTACTGCACATGGTAGCAAGAGACCGATATCTGAACTATACCAAGATGCAAATATAGGACGGGATCTAGTTATCGGGCAGCCAGCTGGCAGTGAGGTTGGTGATCGAGCAGCATCATACGAATCCCGAGGTCCTACTACTTTCAAAAGAAACGTGGATGAAGGTGGTTCCACTGTTGATAGGCCACAGGGGATGATTCGCCAAGCAGACAGTGTAGAGGGTGTTGTCATTGACCGCGATGGTGATGAAGTCAATGATAGCAAGATGTCTCCCGGCCCATCTAAACGTCCACGAGAGTCTCATACCTCTGAAGCCTATGAACCATCGTCTGGTGCGGGTCCTAGCCAGACCTTGTATTTTGATATTGGACGGGCTGGTCCTTCCAGCCAAGGTCATGAACAAACAGGAAGAGCTTCCTCTGTTATTGCAATGGATACAATTTGTCATAGTGACGACGATGATTCAATGGAAAGTGTCGAAAATCATCCAGGATTTGTCGATGAGGTTAATTATCCGTCCATGTCAGGAGTCAAGAGCCCTGATGTCAATGACACATCAGATTTGAATGTCAGCATTCAGGCTCAGCAAAGTACGTGCCCAGCAGTTGTTCGAGTCACGGGTGAGATAGGTGTTAGCAGCACCAATGATGAAGAAGTACTTAACACCGATACCACCACGGTTCATGGGCGGGATGGTCCTAGCCTTGCTATTAGTGGTGGTAGTGTTGGAATGGGTGCTAGTCATGAAGCTGAGATTCATGGGTCTGATGCTTTGATTCATAGGACAGAAAGTGTTGTTGGTGACATGGAACCGGTTACTGGTGTGACCGAGAATCAAGGTCAAACTGGTGAGTTTGTCCCTGAAGAACTGCAACAAGAATATTCTGGAAGGGCGGATAGTGGATCGAAAATTGTTGGTTCAGTAAAGGCGGAATCTGTTGAGAGTGGTGACAAGACCAGTGACTTGAATCTCTTACCTAATGAGCAAAGTTCTCATCCTTCTCTTTCTTGCAATGCGGTTGTATTTTCTGGCCTTGAAGCATCAAAAGATGAGGTGATGCAGGCACGCAACTCATCTCCTAACGATGAATGTGGCTACCCTGCAAATGGGATTGGGCCTCCAAATGGAGAAAGCAATTTTGAAGAACCTGTAGAGTTTGACCCAATTAAGCATCACAATTTTTTCTGCCCTTGGGTGAATGGCAATGTTGCTGCAGCTGGGGTTATTAACGGTAACAATGGTGCCAGTTCAAGTGCTAGTGCTGTAGCTCTTTGTGGATGGCAGCTGACTTTAGATGCTTTAGATGGCTTCCAAGGGCCTGAACAAAATCAAACTGTTGAATCTGAATCAGCTGCTTCTCTCTACAAGGATGATCGTCGAGGTTCTGGTAAAAAACTCATGGCACGGCATTCCTTTAACAAAAATCGTGGTCAAAATTGA 2685 46.26 MREEGISSSGDPLLFPNSPPPTTAASSAGASSPAVATNAGSTDWLSHGQGSKAGSVSRISSQPVWVSFSTSACGSALGSSQPSCRPWERGDLLRRLSTFRPANWFGKPKAASSLACARRGWVNVDVDKIQCESCGANLKYNAPESSAATEGENGEEFSDQLDEGHNVTCPWRGNSCAESLVQFPPTPPSALVGGYKDRCDGLLQFPYLPVVAASALDQMKVSRGPEIDRFLVQSPAYLPDVASDLEICIYSRAQKLISLCGWEPRWLPNIQDFEEHSAQSARNGGSFSPIKDRDCNKKILSASTKKAPRVPTSKFESRSPLLDCTLCGATVRILDFIHVSRPARFAPNNIDVPETSKKMVLTRGISAASGISGWVADGGIEKEQTEDIDEAATTGDGKSVSNIGMDLNLTMGSGFSTAHGSKRPISELYQDANIGRDLVIGQPAGSEVGDRAASYESRGPTTFKRNVDEGGSTVDRPQGMIRQADSVEGVVIDRDGDEVNDSKMSPGPSKRPRESHTSEAYEPSSGAGPSQTLYFDIGRAGPSSQGHEQTGRASSVIAMDTICHSDDDDSMESVENHPGFVDEVNYPSMSGVKSPDVNDTSDLNVSIQAQQSTCPAVVRVTGEIGVSSTNDEEVLNTDTTTVHGRDGPSLAISGGSVGMGASHEAEIHGSDALIHRTESVVGDMEPVTGVTENQGQTGEFVPEELQQEYSGRADSGSKIVGSVKAESVESGDKTSDLNLLPNEQSSHPSLSCNAVVFSGLEASKDEVMQARNSSPNDECGYPANGIGPPNGESNFEEPVEFDPIKHHNFFCPWVNGNVAAAGVINGNNGASSSASAVALCGWQLTLDALDGFQGPEQNQTVESESAASLYKDDRRGSGKKLMARHSFNKNRGQN 894
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00272 894 MobiDBLite consensus disorder prediction 1 53 - -
Lomi1g00272 894 Pfam C3HC zinc finger-like 86 205 IPR012935 GO:0008270(InterPro)
Lomi1g00272 894 MobiDBLite consensus disorder prediction 855 894 - -
Lomi1g00272 894 MobiDBLite consensus disorder prediction 445 553 - -
Lomi1g00272 894 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 892 - GO:0005634(PANTHER)
Lomi1g00272 894 MobiDBLite consensus disorder prediction 20 53 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00272 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
324071 Lomi2g04384 Lomi1g00272
333406 Lomi1g00272 Lomi2g04384
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:2285487 Lomi9g00520 Lomi-Chr9:6604992 dispersed
Lomi Lomi-Chr1:2285487 Lomi2g04384 Lomi-Chr2:49210247 wgd