Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi1g00272 | ATGAGGGAAGAAGGAATCAGCTCATCAGGGGACCCATTACTTTTCCCCAATTCCCCTCCTCCTACCACTGCTGCCAGTTCTGCTGGGGCATCATCACCAGCTGTTGCCACCAATGCTGGCAGTACAGATTGGTTGAGTCATGGTCAAGGATCCAAAGCAGGTTCGGTGTCTCGGATTAGTTCGCAGCCCGTGTGGGTTTCGTTTAGTACAAGTGCATGTGGTTCAGCCCTTGGGTCGTCTCAACCTTCGTGTAGACCATGGGAAAGGGGTGATCTTTTAAGACGATTATCTACATTTAGGCCTGCAAATTGGTTTGGAAAACCTAAGGCTGCTAGTTCGCTTGCTTGTGCTAGGAGGGGCTGGGTGAATGTCGATGTTGATAAGATTCAATGTGAGTCTTGTGGTGCAAACCTCAAATACAATGCACCAGAGTCATCGGCTGCCACAGAAGGTGAAAACGGTGAAGAATTTTCCGACCAACTTGATGAAGGACACAATGTCACCTGCCCTTGGAGAGGAAACAGCTGTGCAGAAAGCTTAGTGCAATTCCCTCCTACTCCACCATCAGCCCTAGTGGGGGGTTACAAGGACCGTTGTGATGGACTACTTCAGTTTCCTTATCTACCTGTTGTGGCTGCTTCTGCACTTGACCAGATGAAGGTCTCTAGAGGTCCAGAAATTGACCGCTTTCTGGTTCAGTCACCTGCTTATCTTCCTGATGTTGCATCTGACTTGGAAATATGCATATATTCACGTGCCCAGAAGTTGATCAGTCTCTGTGGATGGGAACCGAGGTGGCTTCCAAATATTCAAGACTTTGAAGAGCATTCTGCTCAATCGGCTAGAAATGGTGGTTCTTTCAGTCCTATAAAAGATCGTGACTGTAACAAGAAAATCTTATCTGCCTCAACAAAAAAAGCTCCAAGGGTTCCCACATCAAAATTTGAATCTAGATCACCATTGTTAGATTGTACTTTATGTGGCGCCACAGTGAGAATTTTGGATTTCATTCATGTTAGTCGTCCTGCTCGTTTTGCTCCTAACAATATCGATGTCCCTGAAACGAGTAAAAAAATGGTACTTACCCGTGGAATAAGCGCGGCTAGCGGAATTAGCGGATGGGTAGCTGATGGCGGCATTGAGAAAGAGCAGACAGAGGATATTGATGAAGCTGCAACTACTGGTGATGGGAAGTCAGTGTCAAATATCGGGATGGATTTGAATCTTACGATGGGCAGTGGATTTTCTACTGCACATGGTAGCAAGAGACCGATATCTGAACTATACCAAGATGCAAATATAGGACGGGATCTAGTTATCGGGCAGCCAGCTGGCAGTGAGGTTGGTGATCGAGCAGCATCATACGAATCCCGAGGTCCTACTACTTTCAAAAGAAACGTGGATGAAGGTGGTTCCACTGTTGATAGGCCACAGGGGATGATTCGCCAAGCAGACAGTGTAGAGGGTGTTGTCATTGACCGCGATGGTGATGAAGTCAATGATAGCAAGATGTCTCCCGGCCCATCTAAACGTCCACGAGAGTCTCATACCTCTGAAGCCTATGAACCATCGTCTGGTGCGGGTCCTAGCCAGACCTTGTATTTTGATATTGGACGGGCTGGTCCTTCCAGCCAAGGTCATGAACAAACAGGAAGAGCTTCCTCTGTTATTGCAATGGATACAATTTGTCATAGTGACGACGATGATTCAATGGAAAGTGTCGAAAATCATCCAGGATTTGTCGATGAGGTTAATTATCCGTCCATGTCAGGAGTCAAGAGCCCTGATGTCAATGACACATCAGATTTGAATGTCAGCATTCAGGCTCAGCAAAGTACGTGCCCAGCAGTTGTTCGAGTCACGGGTGAGATAGGTGTTAGCAGCACCAATGATGAAGAAGTACTTAACACCGATACCACCACGGTTCATGGGCGGGATGGTCCTAGCCTTGCTATTAGTGGTGGTAGTGTTGGAATGGGTGCTAGTCATGAAGCTGAGATTCATGGGTCTGATGCTTTGATTCATAGGACAGAAAGTGTTGTTGGTGACATGGAACCGGTTACTGGTGTGACCGAGAATCAAGGTCAAACTGGTGAGTTTGTCCCTGAAGAACTGCAACAAGAATATTCTGGAAGGGCGGATAGTGGATCGAAAATTGTTGGTTCAGTAAAGGCGGAATCTGTTGAGAGTGGTGACAAGACCAGTGACTTGAATCTCTTACCTAATGAGCAAAGTTCTCATCCTTCTCTTTCTTGCAATGCGGTTGTATTTTCTGGCCTTGAAGCATCAAAAGATGAGGTGATGCAGGCACGCAACTCATCTCCTAACGATGAATGTGGCTACCCTGCAAATGGGATTGGGCCTCCAAATGGAGAAAGCAATTTTGAAGAACCTGTAGAGTTTGACCCAATTAAGCATCACAATTTTTTCTGCCCTTGGGTGAATGGCAATGTTGCTGCAGCTGGGGTTATTAACGGTAACAATGGTGCCAGTTCAAGTGCTAGTGCTGTAGCTCTTTGTGGATGGCAGCTGACTTTAGATGCTTTAGATGGCTTCCAAGGGCCTGAACAAAATCAAACTGTTGAATCTGAATCAGCTGCTTCTCTCTACAAGGATGATCGTCGAGGTTCTGGTAAAAAACTCATGGCACGGCATTCCTTTAACAAAAATCGTGGTCAAAATTGA | 2685 | 46.26 | MREEGISSSGDPLLFPNSPPPTTAASSAGASSPAVATNAGSTDWLSHGQGSKAGSVSRISSQPVWVSFSTSACGSALGSSQPSCRPWERGDLLRRLSTFRPANWFGKPKAASSLACARRGWVNVDVDKIQCESCGANLKYNAPESSAATEGENGEEFSDQLDEGHNVTCPWRGNSCAESLVQFPPTPPSALVGGYKDRCDGLLQFPYLPVVAASALDQMKVSRGPEIDRFLVQSPAYLPDVASDLEICIYSRAQKLISLCGWEPRWLPNIQDFEEHSAQSARNGGSFSPIKDRDCNKKILSASTKKAPRVPTSKFESRSPLLDCTLCGATVRILDFIHVSRPARFAPNNIDVPETSKKMVLTRGISAASGISGWVADGGIEKEQTEDIDEAATTGDGKSVSNIGMDLNLTMGSGFSTAHGSKRPISELYQDANIGRDLVIGQPAGSEVGDRAASYESRGPTTFKRNVDEGGSTVDRPQGMIRQADSVEGVVIDRDGDEVNDSKMSPGPSKRPRESHTSEAYEPSSGAGPSQTLYFDIGRAGPSSQGHEQTGRASSVIAMDTICHSDDDDSMESVENHPGFVDEVNYPSMSGVKSPDVNDTSDLNVSIQAQQSTCPAVVRVTGEIGVSSTNDEEVLNTDTTTVHGRDGPSLAISGGSVGMGASHEAEIHGSDALIHRTESVVGDMEPVTGVTENQGQTGEFVPEELQQEYSGRADSGSKIVGSVKAESVESGDKTSDLNLLPNEQSSHPSLSCNAVVFSGLEASKDEVMQARNSSPNDECGYPANGIGPPNGESNFEEPVEFDPIKHHNFFCPWVNGNVAAAGVINGNNGASSSASAVALCGWQLTLDALDGFQGPEQNQTVESESAASLYKDDRRGSGKKLMARHSFNKNRGQN | 894 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi1g00272 | 894 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
| Lomi1g00272 | 894 | Pfam | C3HC zinc finger-like | 86 | 205 | IPR012935 | GO:0008270(InterPro) | |
| Lomi1g00272 | 894 | MobiDBLite | consensus disorder prediction | 855 | 894 | - | - | |
| Lomi1g00272 | 894 | MobiDBLite | consensus disorder prediction | 445 | 553 | - | - | |
| Lomi1g00272 | 894 | PANTHER | NUCLEAR-INTERACTING PARTNER OF ALK | 1 | 892 | - | GO:0005634(PANTHER) | |
| Lomi1g00272 | 894 | MobiDBLite | consensus disorder prediction | 20 | 53 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi1g00272 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 324071 | Lomi2g04384 | Lomi1g00272 | |
| 333406 | Lomi1g00272 | Lomi2g04384 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:2285487 | Lomi9g00520 | Lomi-Chr9:6604992 | dispersed | |
| Lomi | Lomi-Chr1:2285487 | Lomi2g04384 | Lomi-Chr2:49210247 | wgd |