Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi1g00307	ATGAGATGCAATGCGTGCTGGCGGGAACTGGATGGACAAGCTATATCTACCACGTGTGGCCATCTCTTATGCAATGAGGATGCTAGTAAGATACTAAGCAACGATGCAGCTTGCCCTATTTGTGATCAAGTACTTTCTAAAAGTCTCATGAAACCTGTGGATATCAACCCAAATGACGAATGGGTAAATATGGCTATGGCTGGAATATCTCCACAGATATTAATGAAGAGTGCATATAGAAGCGTTATTTTCTACATTGGGCAAAAGGAATTAGAAATGCAGTTCAAGATGAACAGGATAGTAGCTCAGTGCAGGCAGAAATGTGAGGCAATGCAAGAGAAGTTCACAGAAAAAATGGAGCAGATCCATACTGCATATCAGAAAATGTCCAAAAGGTGCCAGATGATGGAACAAGAAATTGAGAACTTGTCAAAAGATAAGCAAGAGCTCCAAGAAAAGTTCTCTGAGAAATCCAGGCAAAAGCGAAAACTGGATGAGATGTATGACCCATTAAGAAGTGAGTATGAGTCGGTTAAACGGTCAGCCATTCAGCCTTCAAACAACTTCTTTTCAAGGACAGATCCTGATTTGTTTGCCAGTCCAGCCAACATGATGGATAATAGAGATCCCATGAGAAAAGATTGGGTGGTTTTGACCCCTGACACTCCAGGACCCCGAGAAGATATATGGCCACAAGCAACAAGACAGAGCAGTTCCAATTCTGGACCATTTGACATCCCCCCTAGCCCACCTGCTAAACATTCAGCAGTTCCAGTTGATAACAGAAGACCTATTGGTCGCTCCATGTTCGGAGGTGGTGGTGGGGGTGGAGGTGGCGGCGGCGGCGGTGGTGGAGCAAGCAATCCCTCTATGACCCTGAGAAATCTGATATTGTCGCCAATGAAGCGGCCTCAGGTCTCTCGTAGCCGCCCACAGTTGTTCACGTAA	948	45.36	MRCNACWRELDGQAISTTCGHLLCNEDASKILSNDAACPICDQVLSKSLMKPVDINPNDEWVNMAMAGISPQILMKSAYRSVIFYIGQKELEMQFKMNRIVAQCRQKCEAMQEKFTEKMEQIHTAYQKMSKRCQMMEQEIENLSKDKQELQEKFSEKSRQKRKLDEMYDPLRSEYESVKRSAIQPSNNFFSRTDPDLFASPANMMDNRDPMRKDWVVLTPDTPGPREDIWPQATRQSSSNSGPFDIPPSPPAKHSAVPVDNRRPIGRSMFGGGGGGGGGGGGGGGASNPSMTLRNLILSPMKRPQVSRSRPQLFT	315

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi1g00307	315	ProSiteProfiles	Zinc finger RING-type profile.	3	42	IPR001841	-
	Lomi1g00307	315	Gene3D	Zinc-RING finger domain, C3HC4 (zinc finger)	1	53	IPR013083	-
	Lomi1g00307	315	SUPERFAMILY	RING-U-box	2	50	-	-
	Lomi1g00307	315	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG	1	315	-	GO:0051026(PANTHER)
	Lomi1g00307	315	MobiDBLite	consensus disorder prediction	219	315	-	-
	Lomi1g00307	315	Pfam	zinc-RING finger domain	2	43	IPR001841	-
	Lomi1g00307	315	Coils	Coil	126	167	-	-
	Lomi1g00307	315	FunFam	E3 ubiquitin-protein ligase CCNB1IP1 homolog	1	53	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi1g00307	K10639	E3 ubiquitin-protein ligase CCNP1IP1 [EC:2.3.2.27]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	324092	Lomi2g04353	Lomi1g00307
	333385	Lomi1g00307	Lomi2g04353

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:2626472	Lomi2g04353	Lomi-Chr2:48886001	wgd