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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00326 ATGGACTTCCACCGTTTTTACGAAACATGGTACGAACAACTCAACCACCATATCCGTCACCTAACAAAAGCCCCACGGCCACCCACCACCGATGACCACCACCACCAACTCACTCAACACGTTAATAAAGTCATGTTCCATTTCTCTGAGTTTTACCGAGTCAAGTCACTCGCTGCTAACCAAGATGTTTTGTCCATTTTCTCAGCAAGGTGGTCCACCACCCTAGAACGATCCCTTCACTGGATCGCAGGGTGGCGGCCCACCACTGCGTTTCACCTTATTTATACCGAATCTAGTATACTTTTTGAGTCGCGAATACTAGATATATTGCACGGGTTACGCACCGGCGATCTGGGTGACTTGTCGCCTGCGCAATTTTCCCGTGTTAGTGAGTTGCAGTGTGAAACCGTTCAACAAGAGAACGCTATCACTGACCAACTTTCGGAGTGGCAGCAGGATGAGGCAATTGAACTAATAAGCGGGACATGTGGTGACCTAGATAAAAAGATCGAAAGACTAGCGAAGATCGTCGAAAAGGCGGATGAACTCCGGTTGCGGACGTTGAAAGCGGTAGTGGAGTTACTAACGCCACAACAAGCCGTCGAGTTCTTGATCGCGGCGGCACAGTTGCATTTTGGGATCCATAAGTGGGGTTTGAATCATGATCGTGAACGTTCTCAAAAATGA 687 48.33 MDFHRFYETWYEQLNHHIRHLTKAPRPPTTDDHHHQLTQHVNKVMFHFSEFYRVKSLAANQDVLSIFSARWSTTLERSLHWIAGWRPTTAFHLIYTESSILFESRILDILHGLRTGDLGDLSPAQFSRVSELQCETVQQENAITDQLSEWQQDEAIELISGTCGDLDKKIERLAKIVEKADELRLRTLKAVVELLTPQQAVEFLIAAAQLHFGIHKWGLNHDRERSQK 228
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00326 228 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 2 227 IPR051886 -
Lomi1g00326 228 ProSiteProfiles DOG1 domain profile. 1 224 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lomi1g00326 228 Pfam Seed dormancy control 18 96 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lomi1g00326 228 Coils Coil 166 186 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00326 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
118726 Lomi11g01942 Lomi1g00326
121219 Lomi1g00326 Lomi5g02109
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:2788000 Lomi2g00502 Lomi-Chr2:4472626 dispersed
Lomi Lomi-Chr1:2788000 Lomi11g01942 Lomi-Chr11:27825651 wgd
Lomi Lomi-Chr1:2788000 Lomi5g02109 Lomi-Chr5:31788513 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00067 ACH,LST 22 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 46.824 7.15e-97 293.0
Lomi1g00140 ACH,LST 24 159 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34590 50.0 1.07e-40 132.0
Lomi1g00326 ACH 112 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 27.602 5.37e-18 79.3
Lomi1g00340 ACH,LST 1 311 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 55.357 2.68e-100 297.0
Lomi1g00566 LST 74 268 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G03970 45.536 8.23e-39 134.0
Lomi1g00594 ACH,LST 41 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 32.27 1.40e-26 106.0
Lomi1g01786 LST 8 144 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 53.571 3.51e-51 158.0
Lomi1g02073 ACH,LST 11 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 50.62 2.19e-107 319.0
Lomi1g02333 LST 114 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 25.352 7.08e-15 70.5
Lomi1g02912 LST 1 481 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 61.568 0.0 598.0
Lomi1g03258 LST 1 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 75.658 1.06e-63 191.0
Lomi1g03856 LST 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.529 4.16e-178 494.0
Lomi1g03924 LST 121 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 27.111 2.04e-15 73.2
Lomi1g03952 ACH,LST 1 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G31370 61.081 5.44e-129 374.0
Lomi1g04305 LST 144 469 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G19490 37.322 9.31e-43 154.0
Lomi1g04447 ACH,LST 1 553 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 54.366 5.44e-172 497.0
Lomi1g04487 ACH,LST 1 228 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 65.678 1.86e-107 310.0
Lomi2g00043 ACH,LST 1 228 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 64.407 1.72e-103 300.0
Lomi2g00076 ACH,LST 1 553 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 54.545 1.23e-175 506.0
Lomi2g00200 LST 147 469 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G19490 37.901 9.79e-43 154.0
Lomi2g00362 . 63 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 33.333 5.92e-17 74.3
Lomi2g00443 . 72 287 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G42990 38.261 4.79e-17 79.0
Lomi2g00477 LST 17 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G31370 63.609 1.26e-125 365.0
Lomi2g00502 LST 121 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 26.667 8.63e-16 74.7
Lomi2g00559 LST 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.529 3.42e-177 492.0
Lomi2g01146 LST 1 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 74.342 3.21e-62 187.0
Lomi2g01471 LST 18 481 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 60.474 0.0 566.0
Lomi2g01994 LST 114 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 25.943 3.98e-14 68.6
Lomi2g02271 ACH,LST 4 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 51.843 2.66e-108 321.0
Lomi2g02385 . 337 406 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 49.296 1.10e-15 67.8
Lomi2g02532 LST 9 145 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 53.285 1.52e-50 156.0
Lomi2g03092 . 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 54.688 2.36e-97 288.0
Lomi2g04011 ACH,LST 41 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 33.916 2.22e-26 105.0
Lomi2g04047 LST 146 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G44080 48.066 7.64e-37 130.0
Lomi2g04323 ACH,LST 1 317 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 54.491 3.68e-100 296.0
Lomi2g04520 ACH,LST 38 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 53.488 4.16e-43 138.0
Lomi2g04593 ACH,LST 1 454 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34000 42.71 3.59e-95 291.0
Lomi3g00838 ACH 5 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 51.22 1.63e-47 150.0
Lomi3g01054 ACH,LST 41 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 31.915 5.40e-29 112.0
Lomi3g01304 . 1 310 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 50.915 9.04e-91 271.0
Lomi3g02049 ACH 14 165 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G38800 47.403 3.42e-35 120.0
Lomi3g02050 ACH 10 153 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G38800 44.737 5.67e-30 105.0
Lomi3g02238 LST 23 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 58.145 9.54e-173 492.0
Lomi3g02334 ACH,LST 16 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.83 3.37e-88 264.0
Lomi3g02617 . 19 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 45.723 2.14e-74 231.0
Lomi3g02861 . 1 441 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G36270 49.565 6.55e-115 342.0
Lomi4g01008 ACH 19 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 45.133 3.80e-73 228.0
Lomi4g01196 ACH,LST 16 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.516 6.23e-85 256.0
Lomi4g01290 LST 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 56.376 1.65e-165 474.0
Lomi4g02299 ACH,LST 41 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 31.449 4.07e-27 107.0
Lomi5g00454 ACH,LST 8 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 52.693 5.56e-116 343.0
Lomi5g00555 ACH,LST 15 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 46.951 7.62e-42 135.0
Lomi5g01174 ACH 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 52.618 7.25e-111 325.0
Lomi5g01691 LST 11 276 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 44.969 1.94e-66 209.0
Lomi5g02081 ACH,LST 1 321 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 49.258 1.63e-90 270.0
Lomi5g02109 ACH,LST 121 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 24.528 1.33e-10 58.9
Lomi5g02270 ACH,LST 22 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 45.144 1.42e-77 242.0
Lomi5g02430 ACH,LST 210 307 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 41.837 1.48e-13 69.7
Lomi6g00003 . 148 307 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 31.098 2.04e-15 72.4
Lomi6g00444 LST 15 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 47.164 2.55e-81 248.0
Lomi6g00798 ACH 40 169 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 56.25 1.42e-43 140.0
Lomi6g00884 . 40 158 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 58.462 2.32e-44 143.0
Lomi6g00890 ACH 5 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 43.791 2.57e-25 94.0
Lomi6g00967 ACH,LST 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 54.441 2.09e-109 320.0
Lomi6g01003 . 31 111 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G18160 55.556 8.12e-27 97.1
Lomi6g01438 ACH,LST 9 517 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 49.44 5.26e-138 407.0
Lomi6g01472 ACH,LST 1 241 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 56.757 1.39e-92 271.0
Lomi6g01850 LST 87 451 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 68.182 4.96e-161 461.0
Lomi6g01904 . 1 158 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 45.57 3.54e-36 121.0
Lomi6g01905 ACH 12 163 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 47.134 3.31e-38 127.0
Lomi6g02639 LST 1 372 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 59.151 1.79e-134 388.0
Lomi7g00131 ACH,LST 15 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 47.321 9.97e-81 247.0
Lomi7g00920 ACH,LST 1 303 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 55.014 6.17e-110 322.0
Lomi7g01292 ACH,LST 13 517 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 48.952 3.99e-129 384.0
Lomi7g01310 ACH,LST 1 228 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 61.441 5.66e-93 273.0
Lomi7g01613 LST 4 452 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 58.316 2.19e-162 464.0
Lomi7g01685 ACH 1 158 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 47.468 4.08e-37 124.0
Lomi7g02225 ACH,LST 1 372 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 58.73 3.92e-132 382.0
Lomi8g00221 ACH,LST 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 55.409 1.42e-111 327.0
Lomi8g00596 LST 213 295 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 46.988 1.54e-15 73.9
Lomi8g01077 ACH,LST 1 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 46.988 1.65e-78 240.0
Lomi8g01604 ACH,LST 4 382 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 46.667 7.83e-93 281.0
Lomi8g01701 . 224 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 49.074 3.40e-24 92.0
Lomi8g02131 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.758 1.51e-178 495.0
Lomi8g02215 ACH 29 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 69.018 5.24e-147 422.0
Lomi9g00608 ACH,LST 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 52.381 2.86e-115 341.0
Lomi9g00736 LST 63 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 42.017 4.50e-37 128.0
Lomi9g01108 LST 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 39.31 2.18e-73 231.0
Lomi9g01343 ACH,LST 27 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 61.111 1.51e-50 159.0
Lomi9g01507 ACH 63 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 46.667 1.10e-18 76.6
Lomi9g01871 ACH,LST 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 54.45 1.09e-109 322.0
Lomi9g02217 LST 217 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 49.275 4.76e-11 57.8
Lomi10g00190 ACH,LST 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 54.45 4.20e-108 318.0
Lomi10g00463 LST 213 295 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 49.398 1.06e-16 77.4
Lomi10g01061 ACH 1 214 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 36.744 3.36e-31 111.0
Lomi10g01110 ACH,LST 1 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 44.51 1.96e-73 228.0
Lomi10g01671 ACH 53 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 63.793 8.45e-42 137.0
Lomi10g01908 ACH,LST 4 333 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 48.368 2.51e-88 268.0
Lomi10g02611 ACH 29 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 69.325 7.05e-148 424.0
Lomi11g00336 ACH,LST 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 54.589 1.71e-114 339.0
Lomi11g00434 ACH,LST 9 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 46.746 1.97e-41 135.0
Lomi11g01659 ACH 1 404 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 57.627 2.01e-139 400.0
Lomi11g01691 LST 34 277 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 49.813 5.73e-67 210.0
Lomi11g01930 ACH,LST 1 321 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 48.415 5.08e-89 267.0
Lomi11g01942 ACH,LST 121 316 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 24.336 1.76e-11 61.6
Lomi11g02055 ACH,LST 22 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 42.932 4.85e-75 235.0
Lomi11g02214 ACH,LST 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 51.111 1.55e-21 92.4
Lomi12g00002 . 85 270 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G03970 54.737 8.27e-56 177.0
Lomi12g00125 LST 217 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 53.623 1.06e-15 70.5
Lomi12g00475 ACH,LST 6 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 54.424 1.79e-108 319.0
Lomi12g00821 ACH,LST 39 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 63.359 2.36e-50 159.0
Lomi12g01132 LST 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 38.826 3.62e-71 226.0
Lomi12g01178 LST 63 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 39.834 5.70e-36 125.0
Lomi12g01565 ACH,LST 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 51.905 4.80e-111 331.0
Lomi12g01666 ACH 9 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 49.057 1.09e-42 137.0
Lomi13g00025 LST 5 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 51.506 1.23e-87 263.0
Lomi13g00068 LST 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 64.286 8.25e-146 417.0
Lomi13g00091 LST 23 720 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 48.085 5.50e-171 506.0
Lomi13g00511 . 20 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 45.687 4.19e-92 275.0
Lomi13g00996 ACH 10 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G31370 58.017 1.57e-115 339.0
Lomi13g01035 . 121 316 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 29.046 1.03e-23 96.7
Lomi13g02024 . 37 140 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 40.0 8.97e-20 78.6
Lomi14g00104 . 238 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 58.511 1.17e-27 100.0
Lomi14g01154 LST 23 720 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 47.775 3.64e-167 496.0
Lomi14g01180 LST 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 65.179 1.64e-146 419.0
Lomi14g01223 ACH,LST 5 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 51.852 3.37e-86 259.0