AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00330 ATGGCTAACAGGAATTTGGAGAAATTGGCATCTATTGATGCTCAGTTGAGGCTTTTAGTTCCTGGCAAAGTATCTGAAGATGATAAACTTATTGAATATGATGCTTTGCTTTTAGATAACTTTCTTGATATCCTTCAGGATTTACATGGTGAAGATCTCAGAGAAACGGTTCAAGAATGCTATGAGCTATCTGCTGAATATGAAGGAAAGCGTGATCCAAAAAAGCTTGAAGAGCTTGGAAGTGTGTTAACAAGTTTGGATCCAGGGGATTCAATTGTGATTGCAAAAGCTTTTTCTCACATGCTTAACTTGGCTAATCTGGCTGAAGAGGTTCAGATTGCTTACCGTCGTAGGATCAAGTTGAAGAAGGGTGATTTTGCTGATGAAGCTAATGCAACAACTGAATCTGATATTGAAGAAACTTTTAAGAAACTTGTGCATCAGCTTAAGAAATCCCCTGAAGAGGTTTTTGATGCACTGAAGAATCAAACAGTTGATTTGGTTTTGACTGCTCATCCGACTCAATCTGTCCGTAGATCTTTGCTTCAGAAGCATGGAAGGATTCGGGACTGTCTGGCTCAGTTATATGCCAAAGATATCACTCCGGATGATAAGCAGGAATTAGATGAGGCTTTGCATAGAGAAATTCAAGCTGCTTTCCGTACGGATGAGATTAAGAGGACTCCTCCAACCCCACAAGATGAAATGAGAGCAGGAATGAGTTACTTTCATGAAACAATCTGGAAGGGGGTTCCTAAGTTCTTACGCCGTGTTGATACAGCTCTTAAGAATATTGGGATCAATGAACGCGTTCCGTACAGTTCCCCACTTATTCAATTCTCTTCCTGGATGGGCGGTGATCGTGATGGCAATCCAAGGGTAACTCCCGAGGTAACACGGGATGTTTGCCTACTTGCCCGAATGATGGCTGCTAACATGTACTTTTCGCAGATAGAGGATCTAATGTTTGAGATGTCCATGTGGCGTTGTACTGACGAACTTCGTGTTCGAGCAGAGGAGCTCTATAGAACAGAAAGGAGAGATGTGAAGCATTACATAGAGTTCTGGAAACAGGTCCCTCCCACCGAACCTTATCGTGTGATTCTTGGAGACGTAAGGGATAAGTTATATAATACACGTGAACGATCTCGCCATCTATTAGCCCATGAGAAATCCGACATTCCAGAAGACTCAGTTTATACAGATGTTGAACAGTTCTTGGAACCTCTTGAGCTATGCTACCGATCTCTCTGTGCTTGTGGTGACCGTGTGATTGCTGATGGAAGCCTTCTTGATTTTCTAAGACAAGTGTCCACATTTGGACTCTCACTTGTAAAACTCGATATAAGGCAAGAATCTGACCGCCACACGGACGTACTGGATGCTATCACTCAACATTTGGAAATTGGGTCTTACCGTGAGTGGTCTGAGGAGAAACGCCAAGAATGGCTTCTAGCTGAGCTCGGTGGAAAACGACCTCTTTTTGGTGATGATCTCCCCAAAACTGACGAAATTAAGGATGTTTTGGATACGTTTAGTGTACTGGCGGAACTCCCTTCCGATTGTTTCGGCGCTTACATCATTTCAATGGCTACATCTCCTTCAGATGTTCTTGCTGTTGAGCTACTTCAACGTGAATGCCATGTAAAAAAACCTTTACGAGTGGTCCCACTTTTTGAGAAACTTGCCGATCTTGAGGCAGCCCCCGCTGCCATGGCTCGCCTTTTCTCAATTGAGTGGTACACAAACCGGATCAACGGGAAGCAAGAAGTTATGATTGGGTACTCCGATTCAGGAAAAGATGCTGGAAGGTTTACTGCTGCATGGCAGCTTTACAAGGCCCAAGAAGACCTTATCAAGGTCTCAAAGGAGTTCGGAGTTAAGCTTGTCATGTTCCACGGACGTGGTGGCACTGTCGGTAGAGGAGGTGGCCCCACCCATCTTGCTATCCTATCACAGCCACCAGAGACCATTCATGGTTCTCTAAGAGTCACGGTTCAGGGAGAGGTCATAGAACAATCATTTGGCGAGGAACATTTGTGCTTTAGAACACTTCAGAGGTTTTGTGCAGCTACCCTTGAGCATGGTATGAACCCCCCAATCTCACCACGACCCGAGTGGCGTGAACTTATGGACGAGATAGCAGTTCATGCAACCGAGCAGTATCGTTCTATTGTATTTCAGGAACCACGTTTTGTGGAGTATTTCCGCCTTGCCACACCAGAACTAGAGTATGGACGTATGAATATCGGAAGTCGTCCAGCAAAAAGAAAACCAAGTGGAGGCATAGAATCACTTCGGGCTATTCCATGGATCTTTGCATGGACTCAGACCAGGTTCCATCTCCCGGTTTGGCTCGGGTTTGGGGCAGCATTCAAGCATGCCATCAAAAAGGACAGCAAGAATCTTTCAATGCTACAAGAAATGTACAAAACCTGGCCTTTTTTTAGGGTCACCATTGATCTAGTTGAAATGGTGTTTGCTAAGGGAGACCCAGGCATTGCTGCCCTGAATGACAAGCTCCTTGTCTCTGAAGACCTATGGTCATTTGGAGAATCGTTGAGGGAAAACTACGAAGAAACCAAGGATTATCTTCTCAAGATTGCTGGACATAGGGACCTTCTTGAGGGCGATCCCTACTTGAAACAGAGACTTCGTCTACGTGATTCATATATCACAACCTTGAACGTGTGCCAAGCTTATACCCTAAAACGGATCCGTGATCCAAACTATCATGTGACATTGAGGCCTCATATTTCCAAAGAGTATGCTGAGCCAAGCAAACCAGCTGATGAACTGATCCACCTGAACACGACAAGCGAGTACGCACCAGGTTTGGAGGACACCCTCATCCTGACCATGAAGGGTATTGCTGCTGGAATGCAGAACACCGGTTAA 2898 44.86 MANRNLEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDNFLDILQDLHGEDLRETVQECYELSAEYEGKRDPKKLEELGSVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIKLKKGDFADEANATTESDIEETFKKLVHQLKKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRDCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIKRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYSSPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFEMSMWRCTDELRVRAEELYRTERRDVKHYIEFWKQVPPTEPYRVILGDVRDKLYNTRERSRHLLAHEKSDIPEDSVYTDVEQFLEPLELCYRSLCACGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEWLLAELGGKRPLFGDDLPKTDEIKDVLDTFSVLAELPSDCFGAYIISMATSPSDVLAVELLQRECHVKKPLRVVPLFEKLADLEAAPAAMARLFSIEWYTNRINGKQEVMIGYSDSGKDAGRFTAAWQLYKAQEDLIKVSKEFGVKLVMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDEIAVHATEQYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPAKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHAIKKDSKNLSMLQEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWSFGESLRENYEETKDYLLKIAGHRDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYAEPSKPADELIHLNTTSEYAPGLEDTLILTMKGIAAGMQNTG 965
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00330 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Lomi1g00330 965 FunFam Phosphoenolpyruvate carboxylase 1 308 443 - -
Lomi1g00330 965 Pfam Phosphoenolpyruvate carboxylase 34 965 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lomi1g00330 965 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 33 965 IPR015813 GO:0003824(InterPro)
Lomi1g00330 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 591 603 IPR033129 -
Lomi1g00330 965 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 27 965 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(PANTHER)|GO:0008964(InterPro)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER)
Lomi1g00330 965 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 965 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lomi1g00330 965 Gene3D Phosphoenolpyruvate-pyruvate domain 308 443 - -
Lomi1g00330 965 PRINTS Phosphoenolpyruvate carboxylase signature 440 460 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lomi1g00330 965 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lomi1g00330 965 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lomi1g00330 965 PRINTS Phosphoenolpyruvate carboxylase signature 631 660 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lomi1g00330 965 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lomi1g00330 965 PRINTS Phosphoenolpyruvate carboxylase signature 763 789 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Lomi1g00330 965 PRINTS Phosphoenolpyruvate carboxylase signature 589 609 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00330 K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
118723 Lomi11g01940 Lomi1g00330
121220 Lomi1g00330 Lomi3g00719
121221 Lomi1g00330 Lomi5g02102
324101 Lomi2g04338 Lomi1g00330
333376 Lomi1g00330 Lomi2g04338
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr10:14186049 Lomi1g00330 Lomi-Chr1:2830518 dispersed
Lomi Lomi-Chr1:2830518 Lomi4g02073 Lomi-Chr4:29035979 dispersed
Lomi Lomi-Chr1:2830518 Lomi11g01940 Lomi-Chr11:27773479 wgd
Lomi Lomi-Chr1:2830518 Lomi2g04338 Lomi-Chr2:48759906 wgd
Lomi Lomi-Chr1:2830518 Lomi3g00719 Lomi-Chr3:5897899 wgd
Lomi Lomi-Chr1:2830518 Lomi5g02102 Lomi-Chr5:31732368 wgd