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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00337 ATGGGCGGTTGTGGGTGGTTTAAGAGGTTAGTTGGCAAGAACAGAAAGAAGGAAAACAGACCCAACAAAATAGAGATACAGCAGGATTCCAGGATTGCAAATGGCTCAAAGGGGCGGGATTCTTCTGTGAGAGATTCAAGTTTTCGTGCTGGTAGTAGAAAAGTTATTGGTCGCAGCACTGGAACAAAGGAATTTGCTGCTACTCGAATCCAAACTGCATATCGCTCTTACAGGGCAAGAAAAAAGCTACGTTGTCTGAAAGGAACTGCAAGATTTCAGGTGTTGGTTGAGGCTGATTCTCTTACAAAGCAAGTTTCTTCTGCTCTTAACACAATACATTTGTGGAGCAAAATTCAAACTGAAATCAGAAGCCGACGCCATTGGATGGCGGCAGAAGGTCGGATAAAGCAAAAGAGGCTTGAAAATCAAGTGAAAATTGAGTCTAAGCTTCATGAACTTGAGGTCGAATGGTGTGGTGGACCTGCGACGATGGATGACATTGTCTCCAGGATACAACAGCGCGAGGAGGCCACCATCAAGCGTGAACGAGCAATGGCATATGCCTTCTATCACCAATGGAGGGCGAACTCAAATAGGTATTTTGGTCAAGCTTATTATGATCTAAGCAAAGAGAGTTGGGGCTGGAGTTGGAAGGAGCGTTGGATCGCGGTGTGCCCATGGGAGGCTCGGGTGGTTGCACGGTCAAAGCCAGGTAAAAGAACAAAGCATGTTGCACCAAAGATACTCGTTGCGGTGAAACCCCAAACGACTAATGGAAAAGGCACAATCAAAGCGGCATATGGTACTTTTTAA 813 45.76 MGGCGWFKRLVGKNRKKENRPNKIEIQQDSRIANGSKGRDSSVRDSSFRAGSRKVIGRSTGTKEFAATRIQTAYRSYRARKKLRCLKGTARFQVLVEADSLTKQVSSALNTIHLWSKIQTEIRSRRHWMAAEGRIKQKRLENQVKIESKLHELEVEWCGGPATMDDIVSRIQQREEATIKRERAMAYAFYHQWRANSNRYFGQAYYDLSKESWGWSWKERWIAVCPWEARVVARSKPGKRTKHVAPKILVAVKPQTTNGKGTIKAAYGTF 270
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00337 270 ProSiteProfiles IQ motif profile. 63 91 - -
Lomi1g00337 270 PANTHER IQ-DOMAIN 5-RELATED 6 239 - -
Lomi1g00337 270 MobiDBLite consensus disorder prediction 31 51 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00337 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
121229 Lomi1g00337 Lomi3g00708
324106 Lomi2g04328 Lomi1g00337
333371 Lomi1g00337 Lomi2g04328
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:2925621 Lomi8g01886 Lomi-Chr8:22396667 dispersed
Lomi Lomi-Chr1:2925621 Lomi2g04328 Lomi-Chr2:48668235 wgd
Lomi Lomi-Chr1:2925621 Lomi3g00708 Lomi-Chr3:5802230 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00209 LST 1 402 IQD Protein family AT5G35670 41.247 2.12e-77 244.0
Lomi1g00337 ACH,LST 2 240 IQD Protein family AT3G15050 48.617 1.28e-78 236.0
Lomi1g02130 LST 1 534 IQD Protein family AT4G00820 54.211 1.17e-151 443.0
Lomi1g02584 ACH,LST 1 517 IQD Protein family AT3G59690 41.409 3.49e-112 340.0
Lomi1g03089 ACH,LST 1 449 IQD Protein family AT5G03040 46.46 1.15e-113 338.0
Lomi1g03429 ACH,LST 60 481 IQD Protein family AT4G23060 44.545 2.60e-69 225.0
Lomi1g03591 LST 1 416 IQD Protein family AT2G26180 60.179 6.04e-150 431.0
Lomi1g04131 ACH,LST 210 794 IQD Protein family AT1G19870 37.037 7.51e-85 281.0
Lomi2g00321 ACH,LST 210 794 IQD Protein family AT1G19870 36.699 1.08e-88 291.0
Lomi2g00804 LST 1 416 IQD Protein family AT2G26180 58.837 2.73e-146 422.0
Lomi2g00959 ACH,LST 151 481 IQD Protein family AT4G23060 44.986 4.58e-66 216.0
Lomi2g01323 ACH,LST 1 449 IQD Protein family AT5G03040 47.241 1.66e-116 345.0
Lomi2g01775 ACH,LST 149 517 IQD Protein family AT3G59690 46.75 4.46e-95 298.0
Lomi2g02217 LST 1 534 IQD Protein family AT4G00820 54.577 5.43e-155 451.0
Lomi2g03183 ACH 1 353 IQD Protein family AT3G16490 46.4 9.39e-59 193.0
Lomi2g03700 ACH 1 367 IQD Protein family AT4G14750 46.766 5.23e-83 256.0
Lomi2g04328 ACH,LST 2 240 IQD Protein family AT3G15050 50.391 4.66e-81 243.0
Lomi2g04459 LST 1 392 IQD Protein family AT5G35670 41.523 2.20e-79 249.0
Lomi3g00089 ACH,LST 1 341 IQD Protein family AT3G16490 40.278 3.76e-47 163.0
Lomi3g00591 ACH,LST 1 353 IQD Protein family AT3G16490 53.046 1.87e-95 289.0
Lomi3g00708 ACH 61 225 IQD Protein family AT3G15050 53.939 5.98e-62 192.0
Lomi4g02784 ACH,LST 1 353 IQD Protein family AT3G16490 52.538 1.52e-95 289.0
Lomi4g03097 ACH,LST 1 341 IQD Protein family AT3G16490 38.719 2.40e-43 152.0
Lomi5g00685 ACH,LST 1 794 IQD Protein family AT1G19870 35.249 3.03e-109 351.0
Lomi5g01006 ACH,LST 1 451 IQD Protein family AT5G03040 39.062 9.88e-83 261.0
Lomi5g01247 ACH,LST 45 333 IQD Protein family AT5G07240 45.399 9.48e-45 156.0
Lomi5g01382 LST 1 379 IQD Protein family AT3G22190 54.872 1.16e-113 336.0
Lomi5g01512 ACH,LST 1 480 IQD Protein family AT4G23060 35.497 3.52e-47 166.0
Lomi5g02783 ACH 266 382 IQD Protein family AT4G14750 51.22 5.07e-25 97.1
Lomi6g00731 ACH,LST 1 575 IQD Protein family AT1G74690 39.328 4.88e-85 273.0
Lomi6g02549 . 11 534 IQD Protein family AT4G00820 44.19 4.84e-110 335.0
Lomi7g00828 ACH,LST 1 575 IQD Protein family AT1G74690 39.487 1.57e-80 261.0
Lomi8g00096 ACH,LST 35 340 IQD Protein family AT5G62070 46.526 1.03e-44 156.0
Lomi8g00459 . 1 421 IQD Protein family AT3G52290 50.985 4.38e-112 335.0
Lomi8g00925 ACH,LST 1 575 IQD Protein family AT1G74690 38.992 6.86e-79 257.0
Lomi8g01886 ACH,LST 1 234 IQD Protein family AT3G15050 46.614 3.26e-67 208.0
Lomi9g00088 . 1 414 IQD Protein family AT1G72670 44.105 4.61e-89 274.0
Lomi9g00140 ACH 1 353 IQD Protein family AT3G16490 50.374 3.09e-91 278.0
Lomi9g00470 . 101 572 IQD Protein family AT1G18840 36.456 1.08e-68 228.0
Lomi9g01065 . 35 100 IQD Protein family AT3G51380 69.697 2.69e-24 89.4
Lomi10g00091 ACH,LST 35 340 IQD Protein family AT5G62070 46.526 1.76e-45 158.0
Lomi10g00346 ACH 1 421 IQD Protein family AT3G52290 50.985 6.73e-113 337.0
Lomi10g00566 ACH 1 450 IQD Protein family AT5G03040 55.269 3.51e-151 436.0
Lomi10g00890 ACH,LST 1 575 IQD Protein family AT1G74690 39.832 1.60e-83 269.0
Lomi10g01817 . 1 406 IQD Protein family AT5G13460 43.689 6.24e-94 287.0
Lomi10g02355 ACH,LST 1 234 IQD Protein family AT3G15050 46.667 3.73e-66 206.0
Lomi11g00494 ACH,LST 1 794 IQD Protein family AT1G19870 34.276 3.28e-107 346.0
Lomi11g00839 ACH,LST 107 451 IQD Protein family AT5G03040 45.531 9.41e-80 254.0
Lomi11g01010 ACH,LST 45 333 IQD Protein family AT5G07240 45.345 5.05e-43 152.0
Lomi11g01211 . 1 386 IQD Protein family AT3G22190 55.473 5.32e-110 327.0
Lomi11g01221 LST 1 389 IQD Protein family AT3G22190 56.0 2.94e-120 353.0
Lomi11g01408 ACH,LST 1 480 IQD Protein family AT4G23060 34.476 3.48e-51 177.0
Lomi11g01521 . 1 385 IQD Protein family AT4G10640 26.923 4.10e-28 110.0
Lomi11g02549 ACH 1 378 IQD Protein family AT4G14750 45.366 9.26e-83 255.0
Lomi12g00551 ACH 1 274 IQD Protein family AT3G52290 43.509 1.11e-56 189.0
Lomi12g00926 ACH 1 575 IQD Protein family AT1G74690 39.041 2.68e-80 259.0
Lomi12g02107 ACH 1 353 IQD Protein family AT3G16490 51.263 1.37e-90 276.0
Lomi12g02199 . 1 402 IQD Protein family AT1G72670 42.152 2.80e-82 256.0
Lomi13g00116 LST 1 445 IQD Protein family AT3G49260 49.778 7.25e-97 297.0
Lomi13g00893 ACH,LST 1 263 IQD Protein family AT2G33990 47.687 2.34e-74 227.0
Lomi13g00960 ACH,LST 1 517 IQD Protein family AT3G59690 49.466 1.16e-146 429.0
Lomi13g01867 ACH,LST 1 450 IQD Protein family AT5G03040 51.22 3.11e-132 386.0
Lomi14g00245 ACH,LST 1 517 IQD Protein family AT3G59690 49.559 2.87e-151 441.0
Lomi14g00296 ACH,LST 1 263 IQD Protein family AT2G33990 47.292 6.77e-71 218.0
Lomi14g01127 LST 1 418 IQD Protein family AT3G49260 47.786 1.60e-91 283.0
Lomi15g00171 ACH,LST 1 450 IQD Protein family AT5G03040 51.747 1.19e-134 393.0