AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00344 ATGGAGAAAGAAGAATACACAGTCGTTGATACTTCAAAACTGCTACAAGCAGCTTCTGATTTCTCATTTGATCCTGGTAGTCGATCAGAAGCTGCTGTGAAGAAGTTTCTAGCTTCTTTTCCCCTTCCTGTTATCATCAATGCTTTGCAAACCAAAGGAGATGTCCCTGGTTTGGAGGATGCATTGATTGATTGTTTAGAGAAGATATTTAGAACAAAATATGGGGCCTCACTCATCCCACATTTCATGGCGTTCGTTGTGGTTGGGCTGCAAGCATATTCTCAGAGAGTTAGAGCGTTGTCTTGTAACACGATATCTAGCCTATTGGAGAATCTTGAAGATAATACCGGTTTAGCTACTTCACTGGTGAAAGAAAATGCCGTTTATCCACTTTTGCTTAATTGTCTCGTCGATGGTGACGAACAAGTGGCTGTTGCTGCAACAGATGCAATTAAGACTTTAGCTGGCTCTCAACAGGGGATAGAGATCATATTCCCAGCAACTCCCAATGAAGCTACGGATATCACAAATTTAGCAGCAAGATGTTCATCTCTGGGACGTGTCCGAGTTTTGGCATTGATAGTGAAGCTATTTTCTACATCCAGTGCAGCTGCAACCTTAGTTTACAACTCAAATCTTCTCGGTCTCTTAGAGACGGAAGTTCGCAATGTTAATGATACCCTTATTACCTTGAGCGTTTTAGAGTTGCTCTACGAGTTGGCTGAGGTCCAGCATGGAATGGAATATGTACTTAAGACCAATATTTTGGAGTTACTTATATCCATAATCAGAAACTCTTCTGCTGAATCAATGTTGAGATCAAGGGCAATGATGATAAGTGGTCGGCTTCTGTCCAAAGAGAACATTTTATCGTTTATAGATGAATCTGGTATTAAAGCTGTGATTTCAGCAATTGATGAAAAGCTTTCATTGCTAGATACTCAAGATGCTGATGAATGTGAGTGTGCTCTTGAAGCAATGGGTCAAATAGGGTCATCAACACAAGGAGCTGTCTTGCTACTCTCAAACGCATCTGCTGCTAAACATGTTGTTAATACCGCCTTTGACCTGCATGGTCGTGGCAGACAACTGGCTGCATTGCATTCTTTTGGGAACATTGTAGGAGAAACTCGACCTGAAAACAACAAGTTGTTGAATGCTGATGCTGAAGAATGCATGCGTAGATTAATTTATGAAACGGCATCCAACAGTCCGAAACTCGTACCATCGGGTCTTATTCTTTCGATTCTCAAACTCGAGTCTGAATTTCGTATTGCGGGTTACAGGTTAATAGCAGGATTGGCTGCTAGACCATGGTTTCTTGTGGAGATCTGCTCAAGACAAGAGATAATGAATAAAGTGATGGATCCATATACAGAAACAACTAAAATAGGTATGGAGGCTAGGTACAACTGTTGTGAGGCAATTTATAAGGCTCTTGCCTCATCATCTAAATTTCTGAGTGACCCGGCTCTTTCTGGGACAGCTGTAAAGCTGCTGGAAGCTATTAAAAAGGGTCCTTACCTTGCGAAAGGACAACGACAACGTGAAGCCCAACCTGAAGTAGCAACTGCTGACAGATTTTAG 1587 41.71 MEKEEYTVVDTSKLLQAASDFSFDPGSRSEAAVKKFLASFPLPVIINALQTKGDVPGLEDALIDCLEKIFRTKYGASLIPHFMAFVVVGLQAYSQRVRALSCNTISSLLENLEDNTGLATSLVKENAVYPLLLNCLVDGDEQVAVAATDAIKTLAGSQQGIEIIFPATPNEATDITNLAARCSSLGRVRVLALIVKLFSTSSAAATLVYNSNLLGLLETEVRNVNDTLITLSVLELLYELAEVQHGMEYVLKTNILELLISIIRNSSAESMLRSRAMMISGRLLSKENILSFIDESGIKAVISAIDEKLSLLDTQDADECECALEAMGQIGSSTQGAVLLLSNASAAKHVVNTAFDLHGRGRQLAALHSFGNIVGETRPENNKLLNADAEECMRRLIYETASNSPKLVPSGLILSILKLESEFRIAGYRLIAGLAARPWFLVEICSRQEIMNKVMDPYTETTKIGMEARYNCCEAIYKALASSSKFLSDPALSGTAVKLLEAIKKGPYLAKGQRQREAQPEVATADRF 528
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00344 528 Gene3D - 10 407 IPR011989 -
Lomi1g00344 528 SUPERFAMILY ARM repeat 44 478 IPR016024 -
Lomi1g00344 528 Pfam Proteasome non-ATPase 26S subunit 67 521 IPR019538 GO:0043248(InterPro)
Lomi1g00344 528 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED 1 528 IPR019538 GO:0005829(PANTHER)|GO:0043248(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00344 K06692 26S proteasome non-ATPase regulatory subunit 5
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Event-related genes

Select Gene_1 Gene_2 Event_name
324112 Lomi2g04315 Lomi1g00344
333365 Lomi1g00344 Lomi2g04315
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:3015430 Lomi2g04315 Lomi-Chr2:48561511 wgd